LINC01900

Summary

LINC01900 (long intergenic non-protein coding RNA 1900, HGNC:52719) is a long non-coding RNA gene on chromosome 18q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52719
Approved symbol	LINC01900
Name	long intergenic non-protein coding RNA 1900
Location	18q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000265758
Ensembl biotype	lncRNA
Entrez	102724208
RNAcentral	URS0002A2030F — lncRNA, 1080 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 21 — 21 lncRNA

ENST00000579830, ENST00000584028, ENST00000584898, ENST00000585185, ENST00000716234, ENST00000716235, ENST00000716236, ENST00000716237, ENST00000716238, ENST00000716239, ENST00000716240, ENST00000780669, ENST00000780670, ENST00000780671, ENST00000780672, ENST00000780673, ENST00000780674, ENST00000780675, ENST00000780676, ENST00000780677, ENST00000780678

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000579830 — 2 exons

Exon	Start	End
ENSE00002693239	22088060	22088102
ENSE00004029239	22098371	22098780

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 82.80.

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.80	gold quality
muscle tissue	UBERON:0002385	78.15	gold quality
stromal cell of endometrium	CL:0002255	63.38	gold quality
bone marrow	UBERON:0002371	62.74	gold quality
liver	UBERON:0002107	59.81	gold quality
monocyte	CL:0000576	59.66	gold quality
islet of Langerhans	UBERON:0000006	59.37	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.57	gold quality
vermiform appendix	UBERON:0001154	56.41	gold quality
right lobe of liver	UBERON:0001114	56.22	gold quality
adrenal tissue	UBERON:0018303	56.05	gold quality
blood	UBERON:0000178	55.78	gold quality
prefrontal cortex	UBERON:0000451	55.68	gold quality
lymph node	UBERON:0000029	54.67	gold quality
muscle of leg	UBERON:0001383	53.89	gold quality
gastrocnemius	UBERON:0001388	52.59	gold quality
substantia nigra	UBERON:0002038	51.20	gold quality
tibial artery	UBERON:0007610	50.10	gold quality
fundus of stomach	UBERON:0001160	49.52	gold quality
fallopian tube	UBERON:0003889	48.97	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.98	gold quality
adrenal gland	UBERON:0002369	47.80	gold quality
heart left ventricle	UBERON:0002084	47.56	gold quality
body of pancreas	UBERON:0001150	47.44	gold quality
rectum	UBERON:0001052	47.29	gold quality
body of stomach	UBERON:0001161	47.21	gold quality
stomach	UBERON:0000945	47.12	gold quality
ascending aorta	UBERON:0001496	47.08	gold quality
colon	UBERON:0001155	46.93	gold quality
cerebellum	UBERON:0002037	46.85	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.