LINC01902

Summary

LINC01902 (long intergenic non-protein coding RNA 1902, HGNC:52721) is a long non-coding RNA gene on chromosome 18q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52721
Approved symbol	LINC01902
Name	long intergenic non-protein coding RNA 1902
Location	18q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000283503
Ensembl biotype	lncRNA
Entrez	105372079
RNAcentral	URS0000CCE026 — lncRNA, 4621 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000636467, ENST00000636983, ENST00000637369, ENST00000659647, ENST00000660142, ENST00000663227, ENST00000668049, ENST00000693193, ENST00000700790, ENST00000793336, ENST00000793337, ENST00000793338, ENST00000793339, ENST00000793340, ENST00000793341

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000636467 — 7 exons

Exon	Start	End
ENSE00003792347	39865769	39865911
ENSE00003792511	39864053	39864148
ENSE00003795183	39894785	39896298
ENSE00003796535	39865240	39865400
ENSE00003796998	39870830	39876450
ENSE00003797792	39868888	39868965
ENSE00004176121	39841663	39841912

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 80.08.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1916 / max 23.5930, expressed in 82 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
169995	0.1916	82

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	80.08	gold quality
nucleus accumbens	UBERON:0001882	68.86	gold quality
cortex of kidney	UBERON:0001225	66.89	gold quality
right uterine tube	UBERON:0001302	64.53	gold quality
superior frontal gyrus	UBERON:0002661	64.46	gold quality
Brodmann (1909) area 9	UBERON:0013540	63.39	gold quality
hypothalamus	UBERON:0001898	62.30	gold quality
cortical plate	UBERON:0005343	62.04	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.69	gold quality
prefrontal cortex	UBERON:0000451	59.68	gold quality
frontal cortex	UBERON:0001870	59.65	gold quality
anterior cingulate cortex	UBERON:0009835	59.50	gold quality
cerebral cortex	UBERON:0000956	59.48	gold quality
right frontal lobe	UBERON:0002810	59.36	gold quality
ventricular zone	UBERON:0003053	59.35	gold quality
caudate nucleus	UBERON:0001873	58.17	gold quality
brain	UBERON:0000955	57.40	gold quality
Ammon’s horn	UBERON:0001954	57.22	gold quality
putamen	UBERON:0001874	55.78	gold quality
ganglionic eminence	UBERON:0004023	55.59	silver quality
primary visual cortex	UBERON:0002436	55.35	gold quality
kidney	UBERON:0002113	55.25	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	54.91	gold quality
substantia nigra	UBERON:0002038	54.74	gold quality
fallopian tube	UBERON:0003889	52.32	gold quality
monocyte	CL:0000576	52.29	gold quality
temporal lobe	UBERON:0001871	51.94	gold quality
amygdala	UBERON:0001876	51.89	gold quality
islet of Langerhans	UBERON:0000006	51.69	gold quality
corpus callosum	UBERON:0002336	51.40	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.04

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.