LINC01909

Summary

LINC01909 (long intergenic non-protein coding RNA 1909, HGNC:52728) is a long non-coding RNA gene on chromosome 18q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52728
Approved symbol	LINC01909
Name	long intergenic non-protein coding RNA 1909
Location	18q22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000266258
Ensembl biotype	lncRNA
Entrez	101927481
RNAcentral	URS00007E2CC5 — lncRNA, 815 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000583247, ENST00000584919, ENST00000783305, ENST00000783306, ENST00000783307, ENST00000783308, ENST00000783309, ENST00000783310

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000583247 — 6 exons

Exon	Start	End
ENSE00002692170	70336058	70336140
ENSE00002697286	70336322	70336504
ENSE00002698925	70348972	70349114
ENSE00002718956	70339800	70339881
ENSE00004157282	70351979	70352123
ENSE00004157284	70335264	70335506

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 86.95.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.95	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.87	gold quality
right lobe of liver	UBERON:0001114	80.96	gold quality
liver	UBERON:0002107	80.90	gold quality
colonic epithelium	UBERON:0000397	75.16	gold quality
skeletal muscle tissue	UBERON:0001134	74.10	gold quality
mucosa of transverse colon	UBERON:0004991	70.31	gold quality
muscle tissue	UBERON:0002385	69.75	gold quality
bone marrow cell	CL:0002092	69.40	silver quality
ventricular zone	UBERON:0003053	68.95	gold quality
corpus callosum	UBERON:0002336	67.92	gold quality
ganglionic eminence	UBERON:0004023	67.34	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.92	gold quality
cortical plate	UBERON:0005343	65.99	gold quality
gastrocnemius	UBERON:0001388	64.79	gold quality
muscle of leg	UBERON:0001383	64.54	gold quality
endometrium	UBERON:0001295	63.52	gold quality
urinary bladder	UBERON:0001255	63.41	gold quality
lower esophagus mucosa	UBERON:0035834	63.22	gold quality
sural nerve	UBERON:0015488	63.19	gold quality
right lung	UBERON:0002167	63.17	gold quality
bone marrow	UBERON:0002371	62.95	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	62.81	gold quality
transverse colon	UBERON:0001157	62.65	gold quality
heart left ventricle	UBERON:0002084	62.42	gold quality
small intestine	UBERON:0002108	62.32	gold quality
substantia nigra	UBERON:0002038	62.10	gold quality
small intestine Peyer’s patch	UBERON:0003454	61.99	gold quality
intestine	UBERON:0000160	61.04	gold quality
heart	UBERON:0000948	60.92	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.88

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.