LINC01913

Summary

LINC01913 (long intergenic non-protein coding RNA 1913, HGNC:52732) is a long non-coding RNA gene on chromosome 2p21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52732
Approved symbol	LINC01913
Name	long intergenic non-protein coding RNA 1913
Location	2p21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000214691
Ensembl biotype	lncRNA
Entrez	388942
RNAcentral	URS000075DCE4 — lncRNA, 1825 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000398796, ENST00000418836, ENST00000442214, ENST00000649168, ENST00000652836, ENST00000653176, ENST00000653206, ENST00000653210, ENST00000653561, ENST00000656010, ENST00000657200, ENST00000657390, ENST00000661325, ENST00000664801, ENST00000787260, ENST00000787261, ENST00000787262

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000398796 — 3 exons

Exon	Start	End
ENSE00001534923	41892529	41894050
ENSE00001677131	41890351	41890418
ENSE00001725377	41877554	41877778

Expression profiles

Bgee: expression breadth broad, 92 present calls, max score 76.86.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0875 / max 97.5388, expressed in 13 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
19906	0.0696	10
19905	0.0067	3
19904	0.0059	3
202170	0.0053	3

Top tissues by expression

203 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.86	silver quality
left testis	UBERON:0004533	75.86	gold quality
right testis	UBERON:0004534	74.64	gold quality
testis	UBERON:0000473	73.54	gold quality
sperm	CL:0000019	66.24	silver quality
left ventricle myocardium	UBERON:0006566	64.77	gold quality
cardiac muscle of right atrium	UBERON:0003379	64.19	gold quality
cortical plate	UBERON:0005343	61.86	silver quality
sural nerve	UBERON:0015488	61.18	silver quality
adult organism	UBERON:0007023	57.80	silver quality
tonsil	UBERON:0002372	57.58	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.00	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	55.77	gold quality
myocardium	UBERON:0002349	55.57	gold quality
minor salivary gland	UBERON:0001830	54.89	gold quality
pancreatic ductal cell	CL:0002079	54.37	silver quality
cerebellar vermis	UBERON:0004720	53.99	gold quality
epithelial cell of pancreas	CL:0000083	53.97	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
calcaneal tendon	UBERON:0003701	53.61	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
saliva-secreting gland	UBERON:0001044	53.12	gold quality
tibialis anterior	UBERON:0001385	53.10	silver quality
mouth mucosa	UBERON:0003729	52.63	gold quality
monocyte	CL:0000576	52.41	gold quality
quadriceps femoris	UBERON:0001377	51.31	gold quality
right frontal lobe	UBERON:0002810	51.00	gold quality
deltoid	UBERON:0001476	50.83	gold quality
islet of Langerhans	UBERON:0000006	50.29	gold quality
adrenal tissue	UBERON:0018303	49.75	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.