LINC01916

Summary

LINC01916 (long intergenic non-protein coding RNA 1916, HGNC:52735) is a long non-coding RNA gene on chromosome 18q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52735
Approved symbol	LINC01916
Name	long intergenic non-protein coding RNA 1916
Location	18q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000264232
Ensembl biotype	lncRNA
Entrez	107985128
RNAcentral	URS0000EEFDC6 — lncRNA, 1269 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000582028

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000582028 — 3 exons

Exon	Start	End
ENSE00002694307	65447147	65448167
ENSE00002698203	65441690	65441823
ENSE00002705789	65423958	65424071

Expression profiles

Bgee: expression breadth broad, 45 present calls, max score 86.21.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1922 / max 326.8664, expressed in 9 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
170672	0.1922	9

Top tissues by expression

52 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.21	gold quality
quadriceps femoris	UBERON:0001377	77.18	gold quality
pancreas	UBERON:0001264	68.78	silver quality
bone marrow	UBERON:0002371	68.56	silver quality
caudate nucleus	UBERON:0001873	68.02	gold quality
cerebellar vermis	UBERON:0004720	67.75	gold quality
liver	UBERON:0002107	64.06	silver quality
thymus	UBERON:0002370	64.00	silver quality
lung	UBERON:0002048	63.98	silver quality
endocervix	UBERON:0000458	62.68	gold quality
skeletal muscle tissue	UBERON:0001134	61.23	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.33	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	54.91	silver quality
muscle of leg	UBERON:0001383	54.82	gold quality
pituitary gland	UBERON:0000007	54.43	gold quality
gastrocnemius	UBERON:0001388	54.27	gold quality
esophagus	UBERON:0001043	53.63	gold quality
monocyte	CL:0000576	52.80	silver quality
smooth muscle tissue	UBERON:0001135	50.93	gold quality
kidney	UBERON:0002113	50.12	gold quality
myometrium	UBERON:0001296	48.89	silver quality
tibial nerve	UBERON:0001323	48.75	gold quality
ectocervix	UBERON:0012249	47.04	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	46.91	gold quality
Ammon’s horn	UBERON:0001954	45.36	silver quality
brain	UBERON:0000955	44.30	gold quality
prostate gland	UBERON:0002367	44.19	gold quality
vagina	UBERON:0000996	43.77	gold quality
endometrium	UBERON:0001295	43.71	gold quality
left coronary artery	UBERON:0001626	42.78	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.