LINC01917

Summary

LINC01917 (long intergenic non-protein coding RNA 1917, HGNC:52736) is a long non-coding RNA gene on chromosome 18q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52736
Approved symbol	LINC01917
Name	long intergenic non-protein coding RNA 1917
Location	18q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260433
Ensembl biotype	lncRNA
Entrez	101928167
RNAcentral	URS000055F1F0 — lncRNA, 1037 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000565170, ENST00000582064, ENST00000650275, ENST00000652786, ENST00000655115, ENST00000662607, ENST00000667801, ENST00000671412, ENST00000769529, ENST00000769530, ENST00000769531, ENST00000769532, ENST00000769533

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000565170 — 2 exons

Exon	Start	End
ENSE00002596289	53580412	53581059
ENSE00002607871	53579623	53580011

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 98.93.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0102 / max 6.7663, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
171981	0.0102	4

Top tissues by expression

213 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	98.93	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.71	gold quality
right testis	UBERON:0004534	81.07	gold quality
left testis	UBERON:0004533	80.81	gold quality
testis	UBERON:0000473	78.49	gold quality
sural nerve	UBERON:0015488	71.77	gold quality
ganglionic eminence	UBERON:0004023	69.15	gold quality
cortical plate	UBERON:0005343	64.91	gold quality
tibial nerve	UBERON:0001323	63.66	gold quality
bone marrow cell	CL:0002092	63.44	silver quality
body of stomach	UBERON:0001161	59.80	gold quality
stomach	UBERON:0000945	57.43	gold quality
monocyte	CL:0000576	55.75	gold quality
buccal mucosa cell	CL:0002336	55.05	gold quality
islet of Langerhans	UBERON:0000006	53.05	gold quality
right lobe of liver	UBERON:0001114	52.40	gold quality
prefrontal cortex	UBERON:0000451	52.35	gold quality
cortex of kidney	UBERON:0001225	52.19	gold quality
calcaneal tendon	UBERON:0003701	51.82	silver quality
adult mammalian kidney	UBERON:0000082	51.26	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	50.75	gold quality
right adrenal gland cortex	UBERON:0035827	50.37	gold quality
upper lobe of left lung	UBERON:0008952	49.92	gold quality
upper lobe of lung	UBERON:0008948	49.89	gold quality
metanephros cortex	UBERON:0010533	49.46	gold quality
muscle of leg	UBERON:0001383	49.18	gold quality
gastrocnemius	UBERON:0001388	48.82	gold quality
adult organism	UBERON:0007023	48.53	silver quality
fundus of stomach	UBERON:0001160	48.23	gold quality
kidney	UBERON:0002113	47.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.