LINC01920

Summary

LINC01920 (long intergenic non-protein coding RNA 1920, HGNC:52738) is a long non-coding RNA gene on chromosome 2q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52738
Approved symbol	LINC01920
Name	long intergenic non-protein coding RNA 1920
Location	2q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236049
Ensembl biotype	lncRNA
Entrez	101929260
RNAcentral	URS000075D9C0 — lncRNA, 2560 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000441356

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000441356 — 6 exons

Exon	Start	End
ENSE00001682755	150555666	150556680
ENSE00001744891	150569582	150570134
ENSE00001752041	150570816	150570891
ENSE00001792798	150552532	150553326
ENSE00001797031	150571064	150571093
ENSE00002428140	150572163	150572221

Expression profiles

Bgee: expression breadth tissue_specific, 9 present calls, max score 54.77.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0124 / max 5.6944, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
31101	0.0124	3

Top tissues by expression

164 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	54.77	gold quality
upper leg skin	UBERON:0004262	50.49	gold quality
buccal mucosa cell	CL:0002336	48.38	gold quality
monocyte	CL:0000576	47.02	silver quality
skin of hip	UBERON:0001554	46.98	silver quality
biceps brachii	UBERON:0001507	46.97	gold quality
substantia nigra pars reticulata	UBERON:0001966	45.03	gold quality
adrenal tissue	UBERON:0018303	44.51	silver quality
upper lobe of lung	UBERON:0008948	44.38	silver quality
skeletal muscle tissue	UBERON:0001134	44.25	gold quality
lower lobe of lung	UBERON:0008949	44.18	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
prefrontal cortex	UBERON:0000451	43.23	gold quality
substantia nigra pars compacta	UBERON:0001965	42.85	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
blood	UBERON:0000178	42.30	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
dorsal root ganglion	UBERON:0000044	41.51	gold quality
spinal cord	UBERON:0002240	41.48	gold quality
subthalamic nucleus	UBERON:0001906	41.47	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
oviduct epithelium	UBERON:0004804	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
cardiac ventricle	UBERON:0002082	41.15	gold quality
bone marrow	UBERON:0002371	41.14	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
substantia nigra	UBERON:0002038	41.09	gold quality
inferior vagus X ganglion	UBERON:0005363	41.06	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.