LINC01927

Summary

LINC01927 (long intergenic non-protein coding RNA 1927, HGNC:52749) is a long non-coding RNA gene on chromosome 18q23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52749
Approved symbol	LINC01927
Name	long intergenic non-protein coding RNA 1927
Location	18q23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000266312
Ensembl biotype	lncRNA
Entrez	101927651
RNAcentral	URS000075F076 — lncRNA, 937 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 27 lncRNA

ENST00000582231, ENST00000658908, ENST00000658993, ENST00000661118, ENST00000661700, ENST00000808464, ENST00000808465, ENST00000808466, ENST00000808467, ENST00000808468, ENST00000808469, ENST00000808470, ENST00000808471, ENST00000808472, ENST00000808473, ENST00000808474, ENST00000808475, ENST00000808476, ENST00000808477, ENST00000808478, ENST00000808479, ENST00000808480, ENST00000808481, ENST00000808482, ENST00000808483, ENST00000808484, ENST00000808485

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000582231 — 5 exons

Exon	Start	End
ENSE00002717328	76638549	76638688
ENSE00002723256	76638208	76638276
ENSE00002733978	76634882	76634966
ENSE00004203474	76638785	76639030
ENSE00004203476	76622136	76623196

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 90.69.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0151 / max 15.1331, expressed in 4 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
172485	0.0089	1
172484	0.0062	3

Top tissues by expression

212 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	90.69	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.82	gold quality
pancreatic ductal cell	CL:0002079	87.51	silver quality
upper arm skin	UBERON:0004263	72.19	gold quality
kidney epithelium	UBERON:0004819	72.01	gold quality
left testis	UBERON:0004533	71.48	gold quality
epithelial cell of pancreas	CL:0000083	70.47	gold quality
testis	UBERON:0000473	70.40	gold quality
right testis	UBERON:0004534	69.89	gold quality
cardiac muscle of right atrium	UBERON:0003379	66.88	gold quality
left ventricle myocardium	UBERON:0006566	66.67	gold quality
bronchial epithelial cell	CL:0002328	66.18	gold quality
bronchus	UBERON:0002185	65.67	gold quality
oocyte	CL:0000023	64.15	gold quality
secondary oocyte	CL:0000655	63.94	gold quality
ganglionic eminence	UBERON:0004023	62.89	gold quality
cortical plate	UBERON:0005343	61.59	gold quality
nasal cavity epithelium	UBERON:0005384	61.41	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	60.86	gold quality
cerebellar vermis	UBERON:0004720	59.54	gold quality
islet of Langerhans	UBERON:0000006	59.32	gold quality
vena cava	UBERON:0004087	59.21	gold quality
pericardium	UBERON:0002407	58.35	silver quality
gingival epithelium	UBERON:0001949	58.18	gold quality
myocardium	UBERON:0002349	57.86	gold quality
corpus callosum	UBERON:0002336	57.76	gold quality
gingiva	UBERON:0001828	57.48	gold quality
subthalamic nucleus	UBERON:0001906	57.12	gold quality
parotid gland	UBERON:0001831	56.78	gold quality
dorsal plus ventral thalamus	UBERON:0001897	56.75	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.16

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.