LINC01933

Summary

LINC01933 (long intergenic non-protein coding RNA 1933, HGNC:52756) is a long non-coding RNA gene on chromosome 5q33.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52756
Approved symbol	LINC01933
Name	long intergenic non-protein coding RNA 1933
Location	5q33.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254226
Ensembl biotype	lncRNA
Entrez	101927115
RNAcentral	URS000075C977 — lncRNA, 410 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000518431, ENST00000523605, ENST00000524034, ENST00000524295, ENST00000667871, ENST00000670537, ENST00000775933, ENST00000775935, ENST00000775936, ENST00000775938, ENST00000775939

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000518431 — 4 exons

Exon	Start	End
ENSE00002123150	152267265	152267355
ENSE00002129754	152195441	152195530
ENSE00003878249	152270195	152270449
ENSE00004143239	152095552	152095575

Expression profiles

Bgee: expression breadth ubiquitous, 158 present calls, max score 81.37.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2382 / max 26.5402, expressed in 86 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
59689	0.2095	77
59692	0.0287	9

Top tissues by expression

236 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	81.37	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.50	gold quality
ventricular zone	UBERON:0003053	72.31	gold quality
buccal mucosa cell	CL:0002336	68.71	silver quality
islet of Langerhans	UBERON:0000006	67.31	gold quality
bone marrow cell	CL:0002092	65.71	silver quality
colonic epithelium	UBERON:0000397	64.45	silver quality
secondary oocyte	CL:0000655	62.93	gold quality
tibial artery	UBERON:0007610	61.58	gold quality
popliteal artery	UBERON:0002250	61.55	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	61.35	gold quality
hypothalamus	UBERON:0001898	59.97	gold quality
pigmented layer of retina	UBERON:0001782	59.28	gold quality
oocyte	CL:0000023	58.30	gold quality
lower esophagus	UBERON:0013473	58.13	gold quality
lower esophagus muscularis layer	UBERON:0035833	58.12	gold quality
pancreas	UBERON:0001264	58.06	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	57.83	gold quality
aorta	UBERON:0000947	57.65	gold quality
muscle of leg	UBERON:0001383	57.44	gold quality
ganglionic eminence	UBERON:0004023	57.40	silver quality
gastrocnemius	UBERON:0001388	57.38	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.37	gold quality
right testis	UBERON:0004534	57.32	gold quality
lower lobe of lung	UBERON:0008949	56.31	silver quality
spinal cord	UBERON:0002240	56.23	gold quality
right coronary artery	UBERON:0001625	56.06	gold quality
testis	UBERON:0000473	55.80	gold quality
left testis	UBERON:0004533	55.29	gold quality
substantia nigra	UBERON:0002038	54.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.55

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.