LINC01934

Summary

LINC01934 (long intergenic non-protein coding RNA 1934, HGNC:52757) is a long non-coding RNA gene on chromosome 2q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52757
Approved symbol	LINC01934
Name	long intergenic non-protein coding RNA 1934
Location	2q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234663
Ensembl biotype	lncRNA
Entrez	101927156
RNAcentral	URS000081217F — lncRNA, 1765 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000414750, ENST00000424170, ENST00000424655, ENST00000428474, ENST00000435411, ENST00000642559, ENST00000645719, ENST00000645995, ENST00000646009, ENST00000654342, ENST00000654567, ENST00000656623, ENST00000659181, ENST00000669843, ENST00000671084, ENST00000779079, ENST00000779080, ENST00000779081, ENST00000779082, ENST00000779083

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414750 — 5 exons

Exon	Start	End
ENSE00001673842	181101932	181102032
ENSE00001688519	181123932	181123980
ENSE00001710273	181111982	181112057
ENSE00001745236	181108897	181108929
ENSE00001786208	181191922	181192053

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 84.45.

FANTOM5 (CAGE): breadth broad, TPM avg 1.9186 / max 112.5286, expressed in 183 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
23981	1.5613	169
23979	0.2144	61
23982	0.0826	27
23980	0.0602	29

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ganglionic eminence	UBERON:0004023	84.45	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.17	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.32	gold quality
granulocyte	CL:0000094	73.91	gold quality
sural nerve	UBERON:0015488	71.99	gold quality
colonic epithelium	UBERON:0000397	70.31	gold quality
mucosa of transverse colon	UBERON:0004991	69.78	gold quality
bone marrow cell	CL:0002092	69.31	silver quality
calcaneal tendon	UBERON:0003701	68.87	gold quality
hindlimb stylopod muscle	UBERON:0004252	68.38	gold quality
blood	UBERON:0000178	67.88	gold quality
lymph node	UBERON:0000029	67.74	gold quality
corpus callosum	UBERON:0002336	67.44	gold quality
vermiform appendix	UBERON:0001154	65.86	gold quality
bone marrow	UBERON:0002371	65.57	gold quality
adrenal tissue	UBERON:0018303	64.41	gold quality
tonsil	UBERON:0002372	64.39	gold quality
liver	UBERON:0002107	62.61	gold quality
muscle tissue	UBERON:0002385	62.10	gold quality
leukocyte	CL:0000738	61.92	gold quality
skeletal muscle tissue	UBERON:0001134	61.87	gold quality
cortical plate	UBERON:0005343	61.87	gold quality
gall bladder	UBERON:0002110	61.38	gold quality
monocyte	CL:0000576	60.56	gold quality
small intestine	UBERON:0002108	59.94	gold quality
small intestine Peyer’s patch	UBERON:0003454	59.64	gold quality
right lobe of liver	UBERON:0001114	59.52	gold quality
rectum	UBERON:0001052	59.47	gold quality
duodenum	UBERON:0002114	58.80	gold quality
myometrium	UBERON:0001296	58.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	6.69

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Autoimmunity-related LINC01934 and AP002954.4 lncRNA polymorphisms may be effective in pediatric celiac disease: a case-control study. (PMID:38716950)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.