LINC01936

Summary

LINC01936 (long intergenic non-protein coding RNA 1936, HGNC:52759) is a long non-coding RNA gene on chromosome 2p23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52759
Approved symbol	LINC01936
Name	long intergenic non-protein coding RNA 1936
Location	2p23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235997
Ensembl biotype	lncRNA
Entrez	285043
RNAcentral	URS000075A968 — lncRNA, 692 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000421976, ENST00000660932, ENST00000666899, ENST00000670470, ENST00000671597

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000421976 — 2 exons

Exon	Start	End
ENSE00001683683	30346659	30347115
ENSE00001798333	30349937	30352431

Expression profiles

Bgee: expression breadth ubiquitous, 140 present calls, max score 89.76.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1935 / max 33.6790, expressed in 59 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
19580	0.1667	55
19579	0.0181	9
19581	0.0087	3

Top tissues by expression

227 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
apex of heart	UBERON:0002098	89.76	gold quality
heart left ventricle	UBERON:0002084	85.26	gold quality
cardiac ventricle	UBERON:0002082	84.59	gold quality
bone marrow cell	CL:0002092	75.53	silver quality
right lobe of thyroid gland	UBERON:0001119	75.50	gold quality
heart	UBERON:0000948	75.37	gold quality
heart right ventricle	UBERON:0002080	75.05	gold quality
left lobe of thyroid gland	UBERON:0001120	74.56	gold quality
upper lobe of left lung	UBERON:0008952	74.01	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.83	gold quality
right lung	UBERON:0002167	73.68	gold quality
thyroid gland	UBERON:0002046	73.30	gold quality
popliteal artery	UBERON:0002250	73.08	gold quality
tibial artery	UBERON:0007610	73.06	gold quality
left coronary artery	UBERON:0001626	72.96	gold quality
right coronary artery	UBERON:0001625	72.90	gold quality
upper lobe of lung	UBERON:0008948	72.53	gold quality
coronary artery	UBERON:0001621	71.19	gold quality
aorta	UBERON:0000947	69.14	gold quality
metanephros cortex	UBERON:0010533	68.50	gold quality
lung	UBERON:0002048	68.20	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.95	gold quality
myocardium	UBERON:0002349	66.64	gold quality
adult mammalian kidney	UBERON:0000082	65.40	gold quality
smooth muscle tissue	UBERON:0001135	64.81	gold quality
thoracic aorta	UBERON:0001515	64.30	gold quality
ascending aorta	UBERON:0001496	64.24	gold quality
lower esophagus muscularis layer	UBERON:0035833	64.01	gold quality
lower esophagus	UBERON:0013473	63.95	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	63.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.