LINC01938

Summary

LINC01938 (long intergenic non-protein coding RNA 1938, HGNC:52761) is a long non-coding RNA gene on chromosome 5q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52761
Approved symbol	LINC01938
Name	long intergenic non-protein coding RNA 1938
Location	5q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254066
Ensembl biotype	lncRNA
Entrez	105377701
RNAcentral	URS00026A27B2 — lncRNA, 2142 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000521341, ENST00000523538, ENST00000655559, ENST00000656517, ENST00000658983, ENST00000659460, ENST00000663122, ENST00000665914, ENST00000670497, ENST00000808890, ENST00000808891

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000521341 — 3 exons

Exon	Start	End
ENSE00002091426	165240462	165240757
ENSE00002132176	165220577	165222020
ENSE00002136275	165241629	165241752

Expression profiles

Bgee: expression breadth broad, 52 present calls, max score 85.75.

Top tissues by expression

52 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.75	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.35	gold quality
left testis	UBERON:0004533	70.83	gold quality
testis	UBERON:0000473	70.74	gold quality
muscle tissue	UBERON:0002385	70.70	gold quality
right testis	UBERON:0004534	66.82	gold quality
cortical plate	UBERON:0005343	62.90	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.10	gold quality
multicellular organism	UBERON:0000468	58.43	gold quality
gastrocnemius	UBERON:0001388	54.90	gold quality
blood	UBERON:0000178	52.52	gold quality
monocyte	CL:0000576	51.08	gold quality
heart	UBERON:0000948	50.36	gold quality
prefrontal cortex	UBERON:0000451	50.00	gold quality
kidney	UBERON:0002113	49.87	silver quality
substantia nigra	UBERON:0002038	47.17	gold quality
body of pancreas	UBERON:0001150	46.96	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	46.77	silver quality
stomach	UBERON:0000945	46.03	silver quality
primary visual cortex	UBERON:0002436	45.76	silver quality
Brodmann (1909) area 9	UBERON:0013540	45.38	silver quality
prostate gland	UBERON:0002367	44.84	silver quality
hypothalamus	UBERON:0001898	44.66	gold quality
tibial artery	UBERON:0007610	44.61	silver quality
islet of Langerhans	UBERON:0000006	43.87	silver quality
transverse colon	UBERON:0001157	43.49	silver quality
skin of abdomen	UBERON:0001416	43.23	gold quality
body of stomach	UBERON:0001161	42.90	silver quality
putamen	UBERON:0001874	42.69	silver quality
tibial nerve	UBERON:0001323	42.55	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.