LINC01940

Summary

LINC01940 (long intergenic non-protein coding RNA 1940, HGNC:52763) is a long non-coding RNA gene on chromosome 2q37.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52763
Approved symbol	LINC01940
Name	long intergenic non-protein coding RNA 1940
Location	2q37.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227744
Ensembl biotype	lncRNA
Entrez	401039
RNAcentral	URS00022AE7BD — lncRNA, 3491 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000455228, ENST00000799142

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000455228 — 10 exons

Exon	Start	End
ENSE00001592451	238919302	238919516
ENSE00001607310	238921610	238921871
ENSE00001662876	238925938	238926120
ENSE00001699788	238926239	238926269
ENSE00001709659	238921996	238922338
ENSE00001718768	238920488	238920580
ENSE00001744491	238919728	238919847
ENSE00001782969	238921383	238921476
ENSE00003241624	238924858	238925687
ENSE00003244904	238923073	238924390

Expression profiles

Bgee: expression breadth broad, 46 present calls, max score 77.01.

Top tissues by expression

46 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.01	gold quality
stromal cell of endometrium	CL:0002255	61.38	gold quality
left uterine tube	UBERON:0001303	52.37	gold quality
lymph node	UBERON:0000029	49.43	silver quality
myometrium	UBERON:0001296	49.21	gold quality
left testis	UBERON:0004533	46.53	gold quality
testis	UBERON:0000473	46.29	gold quality
right testis	UBERON:0004534	46.19	gold quality
omental fat pad	UBERON:0010414	45.66	gold quality
endometrium	UBERON:0001295	44.49	gold quality
ascending aorta	UBERON:0001496	44.32	gold quality
islet of Langerhans	UBERON:0000006	43.70	silver quality
thoracic aorta	UBERON:0001515	43.65	gold quality
right ovary	UBERON:0002118	43.55	silver quality
ovary	UBERON:0000992	43.54	silver quality
left ovary	UBERON:0002119	43.49	silver quality
right atrium auricular region	UBERON:0006631	43.36	silver quality
thoracic mammary gland	UBERON:0005200	43.34	gold quality
adipose tissue	UBERON:0001013	43.03	gold quality
heart	UBERON:0000948	42.81	gold quality
body of stomach	UBERON:0001161	42.59	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	42.00	silver quality
tibial artery	UBERON:0007610	41.96	silver quality
skin of abdomen	UBERON:0001416	41.95	gold quality
vagina	UBERON:0000996	41.74	gold quality
urinary bladder	UBERON:0001255	41.56	silver quality
transverse colon	UBERON:0001157	41.43	silver quality
left coronary artery	UBERON:0001626	41.23	gold quality
muscle layer of sigmoid colon	UBERON:0035805	41.18	silver quality
small intestine Peyer’s patch	UBERON:0003454	40.36	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.