LINC01944

Summary

LINC01944 (long intergenic non-protein coding RNA 1944, HGNC:52768) is a long non-coding RNA gene on chromosome 5q35.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52768
Approved symbol	LINC01944
Name	long intergenic non-protein coding RNA 1944
Location	5q35.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254299
Ensembl biotype	lncRNA
Entrez	105377728
RNAcentral	URS0000BC4592 — lncRNA, 1096 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000517916, ENST00000652199, ENST00000771116, ENST00000771117

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000517916 — 3 exons

Exon	Start	End
ENSE00002133197	172557867	172558095
ENSE00004133798	172556718	172557502
ENSE00004133799	172558939	172559202

Expression profiles

Bgee: expression breadth broad, 77 present calls, max score 76.86.

Top tissues by expression

77 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.86	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.59	gold quality
bone marrow cell	CL:0002092	70.51	silver quality
ventricular zone	UBERON:0003053	59.27	gold quality
cortical plate	UBERON:0005343	58.33	silver quality
skeletal muscle tissue	UBERON:0001134	56.56	gold quality
prefrontal cortex	UBERON:0000451	50.94	silver quality
urinary bladder	UBERON:0001255	50.37	gold quality
blood	UBERON:0000178	50.16	silver quality
muscle of leg	UBERON:0001383	49.50	gold quality
gastrocnemius	UBERON:0001388	49.09	gold quality
pancreas	UBERON:0001264	48.47	silver quality
cerebellar hemisphere	UBERON:0002245	47.99	silver quality
right coronary artery	UBERON:0001625	47.48	gold quality
endometrium	UBERON:0001295	47.04	gold quality
islet of Langerhans	UBERON:0000006	46.50	silver quality
cerebral cortex	UBERON:0000956	45.83	silver quality
putamen	UBERON:0001874	45.73	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	44.83	silver quality
right lobe of liver	UBERON:0001114	44.71	silver quality
right frontal lobe	UBERON:0002810	44.53	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	44.35	gold quality
heart left ventricle	UBERON:0002084	44.22	silver quality
right testis	UBERON:0004534	43.65	gold quality
right ovary	UBERON:0002118	43.52	silver quality
testis	UBERON:0000473	43.42	gold quality
left coronary artery	UBERON:0001626	43.21	gold quality
gall bladder	UBERON:0002110	43.14	silver quality
multicellular organism	UBERON:0000468	43.11	gold quality
ovary	UBERON:0000992	43.11	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.