LINC01947

Summary

LINC01947 (long intergenic non-protein coding RNA 1947, HGNC:52771) is a long non-coding RNA gene on chromosome 5q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52771
Approved symbol	LINC01947
Name	long intergenic non-protein coding RNA 1947
Location	5q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254130
Ensembl biotype	lncRNA
Entrez	102557615
RNAcentral	URS00000626C6 — lncRNA, 566 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000523742

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000523742 — 3 exons

Exon	Start	End
ENSE00002091402	166905222	166905292
ENSE00002124268	166907925	166908011
ENSE00002136108	166925963	166926370

Expression profiles

Bgee: expression breadth broad, 64 present calls, max score 88.65.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1156 / max 12.6031, expressed in 47 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
64704	0.1156	47

Top tissues by expression

64 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.65	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.09	gold quality
testis	UBERON:0000473	56.62	gold quality
left testis	UBERON:0004533	55.58	gold quality
right testis	UBERON:0004534	55.57	gold quality
monocyte	CL:0000576	55.18	gold quality
blood	UBERON:0000178	52.65	gold quality
liver	UBERON:0002107	49.34	silver quality
heart left ventricle	UBERON:0002084	48.60	gold quality
primary visual cortex	UBERON:0002436	47.93	silver quality
multicellular organism	UBERON:0000468	47.62	gold quality
gastrocnemius	UBERON:0001388	47.42	gold quality
prefrontal cortex	UBERON:0000451	47.01	silver quality
body of pancreas	UBERON:0001150	45.37	silver quality
right lobe of liver	UBERON:0001114	44.75	silver quality
right hemisphere of cerebellum	UBERON:0014890	44.39	silver quality
left adrenal gland	UBERON:0001234	44.20	silver quality
tibial artery	UBERON:0007610	43.85	gold quality
skin of abdomen	UBERON:0001416	43.73	gold quality
right lobe of thyroid gland	UBERON:0001119	43.62	silver quality
cerebellar hemisphere	UBERON:0002245	43.05	silver quality
left coronary artery	UBERON:0001626	42.71	silver quality
thoracic aorta	UBERON:0001515	42.68	silver quality
zone of skin	UBERON:0000014	42.56	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	42.21	silver quality
ascending aorta	UBERON:0001496	42.19	silver quality
skin of leg	UBERON:0001511	41.87	gold quality
muscle layer of sigmoid colon	UBERON:0035805	41.72	gold quality
body of stomach	UBERON:0001161	41.64	gold quality
subcutaneous adipose tissue	UBERON:0002190	41.40	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.