LINC01948

Summary

LINC01948 (long intergenic non-protein coding RNA 1948, HGNC:52772) is a long non-coding RNA gene on chromosome 5q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52772
Approved symbol	LINC01948
Name	long intergenic non-protein coding RNA 1948
Location	5q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248727
Ensembl biotype	lncRNA
Entrez	102467147
RNAcentral	URS0000759BFF — lncRNA, 656 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 26 — 26 lncRNA

ENST00000506836, ENST00000511661, ENST00000653172, ENST00000665339, ENST00000724081, ENST00000724082, ENST00000724083, ENST00000724084, ENST00000724085, ENST00000724086, ENST00000724087, ENST00000724088, ENST00000724089, ENST00000724090, ENST00000724091, ENST00000724092, ENST00000724093, ENST00000724094, ENST00000724095, ENST00000724096, ENST00000724097, ENST00000724098, ENST00000724099, ENST00000724100, ENST00000724101, ENST00000724102

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506836 — 8 exons

Exon	Start	End
ENSE00002029744	56467712	56467812
ENSE00002042012	56464009	56464116
ENSE00002072812	56464987	56465067
ENSE00004046429	56481553	56481772
ENSE00004046440	56452593	56452645
ENSE00004046444	56450600	56450790
ENSE00004046448	56449986	56450100
ENSE00004046463	56457426	56457943

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 80.14.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2380 / max 9.3034, expressed in 140 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
61741	0.2380	140

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
metanephros cortex	UBERON:0010533	80.14	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.49	gold quality
right lobe of thyroid gland	UBERON:0001119	75.60	gold quality
thyroid gland	UBERON:0002046	74.92	gold quality
left lobe of thyroid gland	UBERON:0001120	74.81	gold quality
cerebellar hemisphere	UBERON:0002245	73.86	gold quality
cerebellar cortex	UBERON:0002129	73.77	gold quality
cortex of kidney	UBERON:0001225	73.75	gold quality
cerebellum	UBERON:0002037	73.73	gold quality
right hemisphere of cerebellum	UBERON:0014890	73.36	gold quality
saliva-secreting gland	UBERON:0001044	73.06	gold quality
minor salivary gland	UBERON:0001830	72.57	gold quality
right uterine tube	UBERON:0001302	71.64	gold quality
body of pancreas	UBERON:0001150	70.91	gold quality
kidney	UBERON:0002113	70.12	gold quality
skin of leg	UBERON:0001511	69.37	gold quality
adult mammalian kidney	UBERON:0000082	69.36	gold quality
zone of skin	UBERON:0000014	69.07	gold quality
bone marrow cell	CL:0002092	68.84	silver quality
skin of abdomen	UBERON:0001416	68.52	gold quality
monocyte	CL:0000576	68.49	gold quality
leukocyte	CL:0000738	68.35	gold quality
tonsil	UBERON:0002372	67.32	gold quality
blood	UBERON:0000178	67.24	gold quality
pancreas	UBERON:0001264	66.50	gold quality
granulocyte	CL:0000094	65.73	gold quality
fallopian tube	UBERON:0003889	65.20	gold quality
endometrium	UBERON:0001295	65.18	gold quality
right adrenal gland cortex	UBERON:0035827	64.84	gold quality
left adrenal gland cortex	UBERON:0035825	64.20	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.39

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.