LINC01949

Summary

LINC01949 (long intergenic non-protein coding RNA 1949, HGNC:25650) is a long non-coding RNA gene on chromosome 5q14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:25650
Approved symbol	LINC01949
Name	long intergenic non-protein coding RNA 1949
Location	5q14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000288569
Ensembl biotype	lncRNA
Entrez	55338
RNAcentral	URS00008120F4 — lncRNA, 2898 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000445770, ENST00000611331, ENST00000841287, ENST00000841288, ENST00000841289, ENST00000841290

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445770 — 2 exons

Exon	Start	End
ENSE00001655210	87216606	87218350
ENSE00002263859	87238815	87239790

Expression profiles

Bgee: expression breadth broad, 81 present calls, max score 98.47.

Top tissues by expression

163 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	98.47	gold quality
tendon of biceps brachii	UBERON:0008188	92.60	silver quality
tendon	UBERON:0000043	87.96	silver quality
placenta	UBERON:0001987	87.34	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.63	gold quality
medial globus pallidus	UBERON:0002477	75.71	silver quality
globus pallidus	UBERON:0001875	73.66	silver quality
cervix squamous epithelium	UBERON:0006922	71.14	gold quality
testis	UBERON:0000473	69.31	gold quality
endothelial cell	CL:0000115	68.79	gold quality
oviduct epithelium	UBERON:0004804	67.94	silver quality
fallopian tube	UBERON:0003889	67.77	silver quality
cardia of stomach	UBERON:0001162	66.77	silver quality
pylorus	UBERON:0001166	66.66	silver quality
substantia nigra pars compacta	UBERON:0001965	66.25	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	66.00	gold quality
triceps brachii	UBERON:0001509	65.78	gold quality
gluteal muscle	UBERON:0002000	65.68	gold quality
mucosa of urinary bladder	UBERON:0001259	65.57	silver quality
pericardium	UBERON:0002407	65.56	gold quality
vena cava	UBERON:0004087	65.37	gold quality
superior surface of tongue	UBERON:0007371	65.27	silver quality
cerebellar hemisphere	UBERON:0002245	65.20	silver quality
lateral globus pallidus	UBERON:0002476	65.16	silver quality
cerebellar vermis	UBERON:0004720	65.12	gold quality
pons	UBERON:0000988	65.04	gold quality
pharyngeal mucosa	UBERON:0000355	64.94	gold quality
deltoid	UBERON:0001476	64.92	silver quality
lateral nuclear group of thalamus	UBERON:0002736	64.89	gold quality
mammary duct	UBERON:0001765	64.87	silver quality

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.