LINC01954

Summary

LINC01954 (long intergenic non-protein coding RNA 1954, HGNC:52779) is a long non-coding RNA gene on chromosome 2p25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52779
Approved symbol	LINC01954
Name	long intergenic non-protein coding RNA 1954
Location	2p25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271952
Ensembl biotype	lncRNA
Entrez	101929733
RNAcentral	URS000075E2C2 — lncRNA, 463 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000418835, ENST00000607419, ENST00000652896, ENST00000670239, ENST00000691398, ENST00000743683, ENST00000743684, ENST00000743685, ENST00000743686, ENST00000743687, ENST00000743688, ENST00000743689, ENST00000743690, ENST00000743691, ENST00000743692, ENST00000743693, ENST00000743694

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418835 — 3 exons

Exon	Start	End
ENSE00001680213	10854340	10854600
ENSE00001705905	10847577	10847611
ENSE00001713990	10854863	10854955

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 97.27.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1301 / max 19.5430, expressed in 54 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
202080	0.0907	40
18857	0.0393	19

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right atrium auricular region	UBERON:0006631	97.27	gold quality
apex of heart	UBERON:0002098	94.94	gold quality
heart left ventricle	UBERON:0002084	93.53	gold quality
heart	UBERON:0000948	92.07	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.65	gold quality
thymus	UBERON:0002370	89.56	silver quality
cerebellar vermis	UBERON:0004720	78.78	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.35	silver quality
muscle of leg	UBERON:0001383	78.35	gold quality
gastrocnemius	UBERON:0001388	78.33	gold quality
lower esophagus muscularis layer	UBERON:0035833	77.41	gold quality
lower esophagus	UBERON:0013473	77.26	gold quality
skeletal muscle tissue	UBERON:0001134	77.00	gold quality
hindlimb stylopod muscle	UBERON:0004252	76.91	gold quality
putamen	UBERON:0001874	72.57	gold quality
rectum	UBERON:0001052	72.09	gold quality
nucleus accumbens	UBERON:0001882	71.88	gold quality
mucosa of transverse colon	UBERON:0004991	71.09	gold quality
caudate nucleus	UBERON:0001873	70.51	gold quality
substantia nigra	UBERON:0002038	68.54	gold quality
duodenum	UBERON:0002114	68.19	gold quality
adenohypophysis	UBERON:0002196	67.51	gold quality
tonsil	UBERON:0002372	67.38	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	67.21	gold quality
esophagus	UBERON:0001043	66.92	gold quality
fundus of stomach	UBERON:0001160	66.42	gold quality
pituitary gland	UBERON:0000007	66.19	gold quality
small intestine	UBERON:0002108	66.01	gold quality
ganglionic eminence	UBERON:0004023	65.56	gold quality
small intestine Peyer’s patch	UBERON:0003454	65.44	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.