LINC01960

Summary

LINC01960 (long intergenic non-protein coding RNA 1960, HGNC:52785) is a long non-coding RNA gene on chromosome 2q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52785
Approved symbol	LINC01960
Name	long intergenic non-protein coding RNA 1960
Location	2q31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260868
Ensembl biotype	lncRNA
Entrez	100128905
RNAcentral	URS0000A769FA — lncRNA, 1890 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000563759

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563759 — 1 exons

Exon	Start	End
ENSE00002594333	174025280	174027163

Expression profiles

Bgee: expression breadth broad, 88 present calls, max score 60.28.

Top tissues by expression

88 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
placenta	UBERON:0001987	60.28	gold quality
stromal cell of endometrium	CL:0002255	55.39	gold quality
blood	UBERON:0000178	53.12	silver quality
subcutaneous adipose tissue	UBERON:0002190	52.94	gold quality
monocyte	CL:0000576	52.56	silver quality
thoracic mammary gland	UBERON:0005200	51.85	gold quality
ectocervix	UBERON:0012249	51.31	gold quality
lymph node	UBERON:0000029	50.66	gold quality
adipose tissue	UBERON:0001013	50.62	gold quality
granulocyte	CL:0000094	49.63	silver quality
prefrontal cortex	UBERON:0000451	48.75	silver quality
right ovary	UBERON:0002118	48.40	gold quality
calcaneal tendon	UBERON:0003701	47.87	silver quality
nucleus accumbens	UBERON:0001882	47.44	gold quality
myometrium	UBERON:0001296	47.19	gold quality
omental fat pad	UBERON:0010414	46.98	gold quality
pancreas	UBERON:0001264	46.91	silver quality
metanephros cortex	UBERON:0010533	46.89	gold quality
left uterine tube	UBERON:0001303	46.85	gold quality
vermiform appendix	UBERON:0001154	46.84	gold quality
muscle of leg	UBERON:0001383	46.82	silver quality
fundus of stomach	UBERON:0001160	46.76	gold quality
islet of Langerhans	UBERON:0000006	46.51	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	46.45	silver quality
gastrocnemius	UBERON:0001388	46.43	silver quality
right atrium auricular region	UBERON:0006631	46.15	gold quality
gall bladder	UBERON:0002110	45.91	gold quality
heart left ventricle	UBERON:0002084	45.86	silver quality
multicellular organism	UBERON:0000468	45.84	gold quality
heart	UBERON:0000948	45.76	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.