LINC01961

Summary

LINC01961 (long intergenic non-protein coding RNA 1961, HGNC:52786) is a long non-coding RNA gene on chromosome 2q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52786
Approved symbol	LINC01961
Name	long intergenic non-protein coding RNA 1961
Location	2q14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234148
Ensembl biotype	lncRNA
Entrez	101927424
RNAcentral	URS00026A2709 — lncRNA, 1805 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000449954, ENST00000668674, ENST00000671438, ENST00000811004

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000449954 — 3 exons

Exon	Start	End
ENSE00001640294	113513438	113513548
ENSE00001805766	113514984	113515488
ENSE00003883632	113512222	113512594

Expression profiles

Bgee: expression breadth broad, 87 present calls, max score 79.01.

Top tissues by expression

87 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.01	gold quality
left testis	UBERON:0004533	76.26	gold quality
right testis	UBERON:0004534	75.89	gold quality
testis	UBERON:0000473	75.41	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	61.61	gold quality
ganglionic eminence	UBERON:0004023	61.01	gold quality
myometrium	UBERON:0001296	56.14	gold quality
stromal cell of endometrium	CL:0002255	53.29	silver quality
liver	UBERON:0002107	53.19	silver quality
prefrontal cortex	UBERON:0000451	52.38	gold quality
blood	UBERON:0000178	51.99	gold quality
monocyte	CL:0000576	51.48	silver quality
multicellular organism	UBERON:0000468	50.25	gold quality
primary visual cortex	UBERON:0002436	49.25	silver quality
right lobe of liver	UBERON:0001114	48.70	silver quality
fallopian tube	UBERON:0003889	48.50	gold quality
vermiform appendix	UBERON:0001154	48.10	gold quality
cortex of kidney	UBERON:0001225	47.44	silver quality
muscle of leg	UBERON:0001383	46.82	gold quality
spleen	UBERON:0002106	46.61	gold quality
gastrocnemius	UBERON:0001388	46.28	gold quality
heart left ventricle	UBERON:0002084	46.13	gold quality
frontal cortex	UBERON:0001870	46.09	gold quality
heart	UBERON:0000948	45.71	gold quality
right ovary	UBERON:0002118	45.41	gold quality
Brodmann (1909) area 9	UBERON:0013540	45.41	gold quality
thoracic mammary gland	UBERON:0005200	44.46	gold quality
cerebellum	UBERON:0002037	44.34	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	44.05	gold quality
body of pancreas	UBERON:0001150	43.79	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.