LINC01962

Summary

LINC01962 (long intergenic non-protein coding RNA 1962, HGNC:52787) is a long non-coding RNA gene on chromosome 5q35.3.

Predicted to enable triplet codon-amino acid adaptor activity. Predicted to be involved in translation.

Source: NCBI Gene 102577426 — RefSeq curated summary.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52787
Approved symbol	LINC01962
Name	long intergenic non-protein coding RNA 1962
Location	5q35.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248473
Ensembl biotype	lncRNA
Entrez	102577426
RNAcentral	URS000075CCEE — lncRNA, 467 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000513771, ENST00000655600, ENST00000658296, ENST00000844830

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000513771 — 2 exons

Exon	Start	End
ENSE00004049114	181191042	181191345
ENSE00004049115	181191742	181191956

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 83.03.

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	83.03	gold quality
left testis	UBERON:0004533	75.35	gold quality
testis	UBERON:0000473	74.03	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.02	gold quality
right testis	UBERON:0004534	73.23	gold quality
granulocyte	CL:0000094	63.61	gold quality
liver	UBERON:0002107	62.95	gold quality
skeletal muscle tissue	UBERON:0001134	58.50	gold quality
tonsil	UBERON:0002372	58.48	gold quality
cerebellum	UBERON:0002037	57.95	gold quality
cerebellar hemisphere	UBERON:0002245	57.90	gold quality
cerebellar cortex	UBERON:0002129	57.89	gold quality
lymph node	UBERON:0000029	57.80	gold quality
ganglionic eminence	UBERON:0004023	57.67	silver quality
ventricular zone	UBERON:0003053	57.37	silver quality
right hemisphere of cerebellum	UBERON:0014890	57.13	gold quality
cortical plate	UBERON:0005343	56.71	silver quality
stromal cell of endometrium	CL:0002255	56.55	gold quality
leukocyte	CL:0000738	56.09	gold quality
blood	UBERON:0000178	55.84	gold quality
primary visual cortex	UBERON:0002436	55.47	gold quality
bone marrow	UBERON:0002371	55.24	gold quality
monocyte	CL:0000576	54.88	gold quality
muscle tissue	UBERON:0002385	54.76	gold quality
vermiform appendix	UBERON:0001154	54.05	gold quality
prefrontal cortex	UBERON:0000451	53.92	gold quality
frontal cortex	UBERON:0001870	52.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.41	gold quality
spleen	UBERON:0002106	52.36	gold quality
gall bladder	UBERON:0002110	52.35	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.15

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.