LINC01964

Summary

LINC01964 (long intergenic non-protein coding RNA 1964, HGNC:52789) is a long non-coding RNA gene on chromosome 2p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52789
Approved symbol	LINC01964
Name	long intergenic non-protein coding RNA 1964
Location	2p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260840
Ensembl biotype	lncRNA
Entrez	100996478
RNAcentral	URS0000416397 — lncRNA, 3137 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000567718, ENST00000650835, ENST00000745932, ENST00000745933, ENST00000745934, ENST00000745935

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000567718 — 2 exons

Exon	Start	End
ENSE00002597792	85064783	85067347
ENSE00002604161	85064108	85064679

Expression profiles

Bgee: expression breadth broad, 14 present calls, max score 79.47.

Top tissues by expression

14 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.47	gold quality
blood	UBERON:0000178	52.96	silver quality
monocyte	CL:0000576	52.00	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	44.03	silver quality
testis	UBERON:0000473	41.83	gold quality
esophagus mucosa	UBERON:0002469	41.47	silver quality
left testis	UBERON:0004533	41.21	gold quality
Ammon’s horn	UBERON:0001954	40.85	silver quality
right testis	UBERON:0004534	40.56	gold quality
corpus callosum	UBERON:0002336	39.45	silver quality
minor salivary gland	UBERON:0001830	38.47	silver quality
gastrocnemius	UBERON:0001388	37.86	silver quality
vagina	UBERON:0000996	37.63	silver quality
left ovary	UBERON:0002119	35.88	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.