LINC01965

Summary

LINC01965 (long intergenic non-protein coding RNA 1965, HGNC:52790) is a long non-coding RNA gene on chromosome 2q12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52790
Approved symbol	LINC01965
Name	long intergenic non-protein coding RNA 1965
Location	2q12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256637
Ensembl biotype	lncRNA
Entrez	107985928
RNAcentral	URS0002A49665 — lncRNA, 2478 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 33 — 33 lncRNA

ENST00000412112, ENST00000537492, ENST00000544869, ENST00000545549, ENST00000609391, ENST00000655320, ENST00000668937, ENST00000685363, ENST00000687942, ENST00000688553, ENST00000777143, ENST00000777144, ENST00000777145, ENST00000777146, ENST00000777147, ENST00000777148, ENST00000777149, ENST00000777150, ENST00000777151, ENST00000777152, ENST00000777153, ENST00000777154, ENST00000777155, ENST00000777156, ENST00000777157, ENST00000777158, ENST00000777159, ENST00000777160, ENST00000777161, ENST00000777162, ENST00000777163, ENST00000777164, ENST00000777165

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412112 — 2 exons

Exon	Start	End
ENSE00002271534	104053502	104053620
ENSE00002272465	104057998	104059256

Expression profiles

Bgee: expression breadth broad, 96 present calls, max score 94.61.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3989 / max 208.1053, expressed in 24 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
21780	0.1892	17
21779	0.1830	20
21778	0.0267	12

Top tissues by expression

96 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	94.61	gold quality
ganglionic eminence	UBERON:0004023	86.38	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.30	gold quality
cortical plate	UBERON:0005343	67.42	gold quality
corpus callosum	UBERON:0002336	67.09	gold quality
skeletal muscle tissue	UBERON:0001134	62.81	silver quality
sural nerve	UBERON:0015488	62.78	gold quality
adrenal tissue	UBERON:0018303	60.49	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.30	gold quality
right adrenal gland	UBERON:0001233	58.43	gold quality
right adrenal gland cortex	UBERON:0035827	57.94	gold quality
monocyte	CL:0000576	57.04	gold quality
gall bladder	UBERON:0002110	55.77	gold quality
primary visual cortex	UBERON:0002436	55.51	gold quality
adrenal gland	UBERON:0002369	55.17	gold quality
spleen	UBERON:0002106	55.09	gold quality
kidney	UBERON:0002113	54.89	gold quality
prefrontal cortex	UBERON:0000451	54.81	gold quality
liver	UBERON:0002107	54.60	gold quality
left adrenal gland	UBERON:0001234	54.48	gold quality
left adrenal gland cortex	UBERON:0035825	54.34	gold quality
adult mammalian kidney	UBERON:0000082	54.32	gold quality
blood	UBERON:0000178	53.40	gold quality
cortex of kidney	UBERON:0001225	52.42	gold quality
thyroid gland	UBERON:0002046	51.63	gold quality
cerebellum	UBERON:0002037	50.64	gold quality
left lobe of thyroid gland	UBERON:0001120	50.35	gold quality
right lobe of thyroid gland	UBERON:0001119	50.31	gold quality
frontal cortex	UBERON:0001870	49.70	gold quality
metanephros cortex	UBERON:0010533	49.44	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.