LINC01966

Summary

LINC01966 (long intergenic non-protein coding RNA 1966, HGNC:52792) is a long non-coding RNA gene on chromosome 2q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52792
Approved symbol	LINC01966
Name	long intergenic non-protein coding RNA 1966
Location	2q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000268580
Ensembl biotype	lncRNA
Entrez	105373662
RNAcentral	URS000012815C — lncRNA, 821 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000595809

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000595809 — 3 exons

Exon	Start	End
ENSE00002978932	144879516	144879552
ENSE00003150940	144877734	144878113
ENSE00003208820	144881630	144882033

Expression profiles

Bgee: expression breadth broad, 35 present calls, max score 86.76.

Top tissues by expression

35 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.76	gold quality
anterior cingulate cortex	UBERON:0009835	62.36	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	59.77	gold quality
calcaneal tendon	UBERON:0003701	52.36	silver quality
monocyte	CL:0000576	50.85	silver quality
hypothalamus	UBERON:0001898	49.16	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	49.04	gold quality
blood	UBERON:0000178	47.80	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	47.20	gold quality
gastrocnemius	UBERON:0001388	46.95	gold quality
adrenal gland	UBERON:0002369	46.21	gold quality
vagina	UBERON:0000996	45.14	gold quality
adrenal tissue	UBERON:0018303	44.63	silver quality
prefrontal cortex	UBERON:0000451	44.55	silver quality
heart	UBERON:0000948	44.22	gold quality
right atrium auricular region	UBERON:0006631	43.39	silver quality
kidney	UBERON:0002113	43.34	silver quality
tibial nerve	UBERON:0001323	43.16	gold quality
caudate nucleus	UBERON:0001873	42.86	gold quality
lower esophagus muscularis layer	UBERON:0035833	42.60	silver quality
left coronary artery	UBERON:0001626	42.00	silver quality
subcutaneous adipose tissue	UBERON:0002190	41.68	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	41.47	silver quality
Brodmann (1909) area 9	UBERON:0013540	41.28	silver quality
stomach	UBERON:0000945	40.65	silver quality
heart left ventricle	UBERON:0002084	40.59	silver quality
skin of leg	UBERON:0001511	38.58	silver quality
nucleus accumbens	UBERON:0001882	38.26	silver quality
testis	UBERON:0000473	37.93	gold quality
right testis	UBERON:0004534	37.68	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.