LINC01970

Summary

LINC01970 (long intergenic non-protein coding RNA 1970, HGNC:52796) is a long non-coding RNA gene on chromosome 17q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52796
Approved symbol	LINC01970
Name	long intergenic non-protein coding RNA 1970
Location	17q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000265692
Ensembl biotype	lncRNA
Entrez	101929511
RNAcentral	URS0000A76572 — lncRNA, 1826 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000581489

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000581489 — 2 exons

Exon	Start	End
ENSE00002698229	82292523	82292814
ENSE00002699754	82290046	82291563

Expression profiles

Bgee: expression breadth ubiquitous, 117 present calls, max score 68.21.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.7703 / max 362.1319, expressed in 1002 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
168953	2.9995	721
168954	0.7708	434

Top tissues by expression

209 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	68.21	silver quality
hindlimb stylopod muscle	UBERON:0004252	62.24	gold quality
left testis	UBERON:0004533	58.87	gold quality
calcaneal tendon	UBERON:0003701	58.78	gold quality
right testis	UBERON:0004534	58.78	gold quality
ganglionic eminence	UBERON:0004023	57.56	silver quality
testis	UBERON:0000473	57.27	gold quality
sperm	CL:0000019	57.05	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	56.49	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	54.74	gold quality
monocyte	CL:0000576	53.84	gold quality
epithelium of nasopharynx	UBERON:0001951	53.74	gold quality
right uterine tube	UBERON:0001302	52.96	gold quality
vermiform appendix	UBERON:0001154	51.62	gold quality
blood	UBERON:0000178	50.36	silver quality
muscle of leg	UBERON:0001383	48.97	gold quality
islet of Langerhans	UBERON:0000006	48.81	gold quality
gastrocnemius	UBERON:0001388	48.41	gold quality
caecum	UBERON:0001153	48.10	gold quality
lymph node	UBERON:0000029	48.01	silver quality
right lobe of liver	UBERON:0001114	47.68	silver quality
prefrontal cortex	UBERON:0000451	47.54	silver quality
nasal cavity mucosa	UBERON:0001826	47.43	gold quality
tendon of biceps brachii	UBERON:0008188	47.35	gold quality
right lung	UBERON:0002167	47.11	gold quality
upper leg skin	UBERON:0004262	46.90	silver quality
cortex of kidney	UBERON:0001225	46.80	silver quality
left adrenal gland cortex	UBERON:0035825	46.63	gold quality
gall bladder	UBERON:0002110	46.59	gold quality
pancreas	UBERON:0001264	46.43	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.52

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.