LINC01971

Summary

LINC01971 (long intergenic non-protein coding RNA 1971, HGNC:52797) is a long non-coding RNA gene on chromosome 17q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52797
Approved symbol	LINC01971
Name	long intergenic non-protein coding RNA 1971
Location	17q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000278200
Ensembl biotype	lncRNA
Entrez	105371927
RNAcentral	URS00026A1FC1 — lncRNA, 686 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000617888, ENST00000752695, ENST00000752696, ENST00000752697, ENST00000752698, ENST00000752699

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000617888 — 1 exons

Exon	Start	End
ENSE00003719438	81480523	81481570

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 84.63.

Top tissues by expression

91 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.63	silver quality
cortical plate	UBERON:0005343	65.87	gold quality
ganglionic eminence	UBERON:0004023	61.53	gold quality
cerebellum	UBERON:0002037	61.48	gold quality
right lobe of liver	UBERON:0001114	61.47	gold quality
cerebellar cortex	UBERON:0002129	61.35	gold quality
cerebellar hemisphere	UBERON:0002245	61.32	gold quality
right hemisphere of cerebellum	UBERON:0014890	61.25	gold quality
prefrontal cortex	UBERON:0000451	60.87	gold quality
nucleus accumbens	UBERON:0001882	58.21	gold quality
frontal cortex	UBERON:0001870	58.00	gold quality
Brodmann (1909) area 9	UBERON:0013540	57.65	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.20	gold quality
putamen	UBERON:0001874	57.13	gold quality
brain	UBERON:0000955	56.94	gold quality
cerebral cortex	UBERON:0000956	56.89	gold quality
myometrium	UBERON:0001296	56.84	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.75	silver quality
apex of heart	UBERON:0002098	56.63	gold quality
substantia nigra	UBERON:0002038	56.40	gold quality
skeletal muscle tissue	UBERON:0001134	56.31	gold quality
caudate nucleus	UBERON:0001873	56.06	gold quality
hypothalamus	UBERON:0001898	56.01	gold quality
anterior cingulate cortex	UBERON:0009835	55.97	gold quality
right testis	UBERON:0004534	55.81	gold quality
left testis	UBERON:0004533	55.27	gold quality
amygdala	UBERON:0001876	54.72	gold quality
testis	UBERON:0000473	54.69	gold quality
temporal lobe	UBERON:0001871	54.68	gold quality
right frontal lobe	UBERON:0002810	54.56	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.