LINC01972

Summary

LINC01972 (long intergenic non-protein coding RNA 1972, HGNC:52798) is a long non-coding RNA gene on chromosome 3q29.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52798
Approved symbol	LINC01972
Name	long intergenic non-protein coding RNA 1972
Location	3q29
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230401
Ensembl biotype	lncRNA
Entrez	105374293
RNAcentral	URS00002EFAE6 — lncRNA, 553 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000422271, ENST00000841317, ENST00000841318

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000422271 — 3 exons

Exon	Start	End
ENSE00001677698	194768415	194768517
ENSE00001746366	194768636	194768712
ENSE00001772873	194765238	194765610

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 82.29.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	82.29	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.95	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.09	gold quality
bone marrow cell	CL:0002092	67.65	silver quality
uterine cervix	UBERON:0000002	66.45	silver quality
ganglionic eminence	UBERON:0004023	63.90	gold quality
tonsil	UBERON:0002372	61.76	silver quality
stromal cell of endometrium	CL:0002255	60.18	gold quality
bone marrow	UBERON:0002371	59.36	gold quality
skeletal muscle tissue	UBERON:0001134	57.57	silver quality
islet of Langerhans	UBERON:0000006	56.07	gold quality
lymph node	UBERON:0000029	55.19	gold quality
monocyte	CL:0000576	54.78	silver quality
liver	UBERON:0002107	54.38	gold quality
duodenum	UBERON:0002114	54.01	gold quality
urinary bladder	UBERON:0001255	52.96	gold quality
blood	UBERON:0000178	51.65	silver quality
calcaneal tendon	UBERON:0003701	51.49	gold quality
placenta	UBERON:0001987	51.04	gold quality
prefrontal cortex	UBERON:0000451	50.21	gold quality
gall bladder	UBERON:0002110	49.75	gold quality
metanephros cortex	UBERON:0010533	49.63	gold quality
muscle of leg	UBERON:0001383	48.44	gold quality
gastrocnemius	UBERON:0001388	47.84	silver quality
right lobe of liver	UBERON:0001114	47.14	silver quality
adenohypophysis	UBERON:0002196	46.97	gold quality
tibial artery	UBERON:0007610	45.88	silver quality
kidney	UBERON:0002113	45.78	gold quality
right ovary	UBERON:0002118	45.72	gold quality
myometrium	UBERON:0001296	44.55	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.