LINC01973

Summary

LINC01973 (long intergenic non-protein coding RNA 1973, HGNC:52800) is a long non-coding RNA gene on chromosome 17q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52800
Approved symbol	LINC01973
Name	long intergenic non-protein coding RNA 1973
Location	17q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000204283
Ensembl biotype	lncRNA
Entrez	400624
RNAcentral	URS000075E1E4 — lncRNA, 4704 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000374983, ENST00000664715, ENST00000730395, ENST00000730396, ENST00000730397, ENST00000730398, ENST00000730399, ENST00000730400, ENST00000730401, ENST00000730402, ENST00000730403, ENST00000730404, ENST00000730405, ENST00000730406, ENST00000730407

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000374983 — 2 exons

Exon	Start	End
ENSE00001465318	77879027	77883538
ENSE00003745135	77883922	77884087

Expression profiles

Bgee: expression breadth broad, 79 present calls, max score 76.40.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.7245 / max 296.2586, expressed in 81 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
168324	0.7245	81

Top tissues by expression

79 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	76.40	gold quality
liver	UBERON:0002107	66.13	silver quality
fallopian tube	UBERON:0003889	63.01	gold quality
ventricular zone	UBERON:0003053	62.64	gold quality
bone marrow	UBERON:0002371	62.60	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	61.32	gold quality
vermiform appendix	UBERON:0001154	56.63	gold quality
urinary bladder	UBERON:0001255	56.13	gold quality
blood	UBERON:0000178	54.53	gold quality
leukocyte	CL:0000738	52.57	silver quality
prefrontal cortex	UBERON:0000451	52.00	gold quality
lymph node	UBERON:0000029	51.12	gold quality
duodenum	UBERON:0002114	51.11	gold quality
pancreas	UBERON:0001264	50.87	silver quality
endocervix	UBERON:0000458	50.31	gold quality
ovary	UBERON:0000992	49.62	gold quality
monocyte	CL:0000576	49.22	silver quality
granulocyte	CL:0000094	48.69	silver quality
gall bladder	UBERON:0002110	48.66	gold quality
frontal cortex	UBERON:0001870	47.55	gold quality
multicellular organism	UBERON:0000468	46.60	gold quality
tonsil	UBERON:0002372	45.69	gold quality
gastrocnemius	UBERON:0001388	44.80	silver quality
hypothalamus	UBERON:0001898	44.80	gold quality
caudate nucleus	UBERON:0001873	44.70	gold quality
endometrium	UBERON:0001295	44.36	gold quality
stomach	UBERON:0000945	44.22	silver quality
right hemisphere of cerebellum	UBERON:0014890	44.15	gold quality
Brodmann (1909) area 9	UBERON:0013540	43.98	silver quality
left ovary	UBERON:0002119	43.81	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.