LINC01976

Summary

LINC01976 (long intergenic non-protein coding RNA 1976, HGNC:52803) is a long non-coding RNA gene on chromosome 17q21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52803
Approved symbol	LINC01976
Name	long intergenic non-protein coding RNA 1976
Location	17q21.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261514
Ensembl biotype	lncRNA
Entrez	107546764
RNAcentral	URS0000A766B3 — lncRNA, 539 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000565120, ENST00000592842, ENST00000717215, ENST00000741239, ENST00000741240, ENST00000741241, ENST00000741242, ENST00000741243, ENST00000741244, ENST00000741245, ENST00000741246, ENST00000741247, ENST00000741248, ENST00000741249, ENST00000741250

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000565120 — 6 exons

Exon	Start	End
ENSE00004031919	43932473	43932702
ENSE00004031922	43929795	43929967
ENSE00004078231	43938561	43938967
ENSE00004078233	43926845	43927123
ENSE00004477010	43934182	43934252
ENSE00004477012	43938228	43938397

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 97.72.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.7760 / max 426.9944, expressed in 146 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
161098	0.7097	127
161099	0.0342	8
161097	0.0321	12

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
quadriceps femoris	UBERON:0001377	97.72	gold quality
cerebellar vermis	UBERON:0004720	93.70	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	90.07	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.19	gold quality
left testis	UBERON:0004533	76.82	gold quality
skeletal muscle tissue	UBERON:0001134	76.13	silver quality
right testis	UBERON:0004534	75.53	gold quality
testis	UBERON:0000473	75.47	gold quality
bone marrow	UBERON:0002371	72.62	silver quality
thymus	UBERON:0002370	68.55	silver quality
adult mammalian kidney	UBERON:0000082	68.51	gold quality
kidney	UBERON:0002113	68.46	gold quality
ventricular zone	UBERON:0003053	67.66	gold quality
metanephros cortex	UBERON:0010533	67.03	gold quality
cortex of kidney	UBERON:0001225	65.14	gold quality
tonsil	UBERON:0002372	61.94	silver quality
monocyte	CL:0000576	61.42	gold quality
islet of Langerhans	UBERON:0000006	61.04	gold quality
hypothalamus	UBERON:0001898	60.78	gold quality
superior frontal gyrus	UBERON:0002661	59.53	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.84	gold quality
anterior cingulate cortex	UBERON:0009835	57.67	gold quality
mucosa of transverse colon	UBERON:0004991	57.63	gold quality
prefrontal cortex	UBERON:0000451	57.56	gold quality
Brodmann (1909) area 9	UBERON:0013540	57.23	gold quality
cerebral cortex	UBERON:0000956	56.90	gold quality
frontal cortex	UBERON:0001870	56.70	gold quality
right frontal lobe	UBERON:0002810	56.44	gold quality
lymph node	UBERON:0000029	55.87	gold quality
vermiform appendix	UBERON:0001154	55.71	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.