LINC01979

Summary

LINC01979 (long intergenic non-protein coding RNA 1979, HGNC:52807) is a long non-coding RNA gene on chromosome 17q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52807
Approved symbol	LINC01979
Name	long intergenic non-protein coding RNA 1979
Location	17q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000262585
Ensembl biotype	lncRNA
Entrez	101928766
RNAcentral	URS000024EA05 — lncRNA, 5271 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000576738, ENST00000771149, ENST00000771150, ENST00000771151, ENST00000771152, ENST00000771153, ENST00000771154, ENST00000771155

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000576738 — 6 exons

Exon	Start	End
ENSE00002644453	79925701	79926725
ENSE00002647131	79925014	79925071
ENSE00002647729	79915252	79915413
ENSE00002656996	79921950	79922102
ENSE00002661135	79916187	79919836
ENSE00002666708	79921404	79921626

Expression profiles

Bgee: expression breadth broad, 69 present calls, max score 58.93.

Top tissues by expression

69 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	58.93	silver quality
blood	UBERON:0000178	57.70	gold quality
skeletal muscle tissue	UBERON:0001134	52.76	silver quality
prefrontal cortex	UBERON:0000451	49.16	gold quality
body of pancreas	UBERON:0001150	48.61	gold quality
pancreas	UBERON:0001264	48.39	silver quality
muscle of leg	UBERON:0001383	48.36	gold quality
gastrocnemius	UBERON:0001388	47.93	gold quality
duodenum	UBERON:0002114	47.32	silver quality
right lobe of liver	UBERON:0001114	47.23	silver quality
body of stomach	UBERON:0001161	47.00	gold quality
subcutaneous adipose tissue	UBERON:0002190	46.93	silver quality
stomach	UBERON:0000945	46.92	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	46.19	gold quality
frontal cortex	UBERON:0001870	45.89	silver quality
endometrium	UBERON:0001295	45.61	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	45.58	silver quality
islet of Langerhans	UBERON:0000006	45.48	silver quality
Brodmann (1909) area 9	UBERON:0013540	45.04	gold quality
superior frontal gyrus	UBERON:0002661	44.97	silver quality
substantia nigra	UBERON:0002038	44.43	gold quality
cerebral cortex	UBERON:0000956	44.17	gold quality
tibial nerve	UBERON:0001323	44.11	gold quality
primary visual cortex	UBERON:0002436	43.69	silver quality
Ammon’s horn	UBERON:0001954	43.44	gold quality
tibial artery	UBERON:0007610	43.21	silver quality
gall bladder	UBERON:0002110	43.13	silver quality
fundus of stomach	UBERON:0001160	43.01	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	42.80	gold quality
right frontal lobe	UBERON:0002810	42.70	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.