LINC01983

Summary

LINC01983 (long intergenic non-protein coding RNA 1983, HGNC:52813) is a long non-coding RNA gene on chromosome 3q29.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52813
Approved symbol	LINC01983
Name	long intergenic non-protein coding RNA 1983
Location	3q29
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223783
Ensembl biotype	lncRNA
Entrez	101929697
RNAcentral	URS0000A765B4 — lncRNA, 305 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000413586, ENST00000429834, ENST00000444346, ENST00000787543, ENST00000787544, ENST00000787545, ENST00000787546, ENST00000787547, ENST00000787548, ENST00000787549, ENST00000787550, ENST00000787551, ENST00000787552, ENST00000787553, ENST00000787554

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413586 — 2 exons

Exon	Start	End
ENSE00004165220	195836334	195836615
ENSE00004165221	195836754	195837113

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 99.00.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0538 / max 22.5319, expressed in 14 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
46308	0.0538	14

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
quadriceps femoris	UBERON:0001377	99.00	silver quality
cerebellar vermis	UBERON:0004720	98.86	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.27	silver quality
lower esophagus mucosa	UBERON:0035834	82.55	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.64	silver quality
muscle tissue	UBERON:0002385	76.08	gold quality
skeletal muscle tissue	UBERON:0001134	69.02	silver quality
kidney	UBERON:0002113	65.75	gold quality
thymus	UBERON:0002370	64.46	silver quality
adult mammalian kidney	UBERON:0000082	63.85	gold quality
cortex of kidney	UBERON:0001225	63.40	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	63.07	gold quality
metanephros cortex	UBERON:0010533	61.52	gold quality
bone marrow	UBERON:0002371	60.50	gold quality
tonsil	UBERON:0002372	60.29	gold quality
esophagus mucosa	UBERON:0002469	60.26	gold quality
esophagus	UBERON:0001043	59.22	gold quality
monocyte	CL:0000576	57.88	gold quality
placenta	UBERON:0001987	57.25	gold quality
blood	UBERON:0000178	54.46	gold quality
duodenum	UBERON:0002114	54.41	gold quality
liver	UBERON:0002107	54.30	gold quality
prefrontal cortex	UBERON:0000451	53.61	gold quality
islet of Langerhans	UBERON:0000006	53.19	gold quality
urinary bladder	UBERON:0001255	52.61	gold quality
vagina	UBERON:0000996	52.33	gold quality
pancreas	UBERON:0001264	51.78	gold quality
muscle of leg	UBERON:0001383	51.68	gold quality
right lobe of liver	UBERON:0001114	51.55	gold quality
gastrocnemius	UBERON:0001388	51.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.68

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.