LINC01985

Summary

LINC01985 (long intergenic non-protein coding RNA 1985, HGNC:52816) is a long non-coding RNA gene on chromosome 3p24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52816
Approved symbol	LINC01985
Name	long intergenic non-protein coding RNA 1985
Location	3p24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227260
Ensembl biotype	lncRNA
Entrez	101928015
RNAcentral	URS0002A4986F — lncRNA, 822 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000450746, ENST00000657930, ENST00000814177, ENST00000814178, ENST00000814179, ENST00000814180, ENST00000814181, ENST00000814182, ENST00000814183, ENST00000814184, ENST00000814185, ENST00000814186

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000450746 — 3 exons

Exon	Start	End
ENSE00001692853	30524703	30524826
ENSE00004214952	30518846	30518957
ENSE00004214966	30526837	30527195

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 83.94.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1285 / max 6.8341, expressed in 66 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
35826	0.0781	52
35827	0.0505	34

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.94	gold quality
colonic epithelium	UBERON:0000397	73.35	gold quality
right atrium auricular region	UBERON:0006631	68.62	gold quality
monocyte	CL:0000576	64.60	gold quality
lymph node	UBERON:0000029	63.70	gold quality
mucosa of transverse colon	UBERON:0004991	63.42	gold quality
right coronary artery	UBERON:0001625	63.35	gold quality
heart	UBERON:0000948	61.81	gold quality
left coronary artery	UBERON:0001626	61.03	gold quality
adipose tissue	UBERON:0001013	60.38	gold quality
omental fat pad	UBERON:0010414	60.34	gold quality
subcutaneous adipose tissue	UBERON:0002190	60.29	gold quality
thoracic mammary gland	UBERON:0005200	60.26	gold quality
skeletal muscle tissue	UBERON:0001134	58.91	silver quality
left uterine tube	UBERON:0001303	58.51	gold quality
popliteal artery	UBERON:0002250	58.38	gold quality
right lobe of thyroid gland	UBERON:0001119	58.37	gold quality
tibial artery	UBERON:0007610	58.35	gold quality
thoracic aorta	UBERON:0001515	57.68	gold quality
ascending aorta	UBERON:0001496	57.62	gold quality
heart left ventricle	UBERON:0002084	57.41	gold quality
muscle tissue	UBERON:0002385	57.40	gold quality
fundus of stomach	UBERON:0001160	57.14	gold quality
descending thoracic aorta	UBERON:0002345	57.09	gold quality
tonsil	UBERON:0002372	56.85	gold quality
thyroid gland	UBERON:0002046	56.74	gold quality
left lobe of thyroid gland	UBERON:0001120	56.73	gold quality
fallopian tube	UBERON:0003889	55.63	gold quality
mucosa of stomach	UBERON:0001199	55.29	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.23	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.09

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.