LINC01988

Summary

LINC01988 (long intergenic non-protein coding RNA 1988, HGNC:52820) is a long non-coding RNA gene on chromosome 3p21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52820
Approved symbol	LINC01988
Name	long intergenic non-protein coding RNA 1988
Location	3p21.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	PAAN
Ensembl gene	ENSG00000283036
Ensembl biotype	lncRNA
Entrez	100506319
RNAcentral	URS0000A77313 — lncRNA, 866 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000634998, ENST00000636975, ENST00000663017, ENST00000794897

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000634998 — 4 exons

Exon	Start	End
ENSE00003790663	44428555	44428624
ENSE00003791272	44428847	44428941
ENSE00004179120	44427947	44428158
ENSE00004179122	44429066	44429531

Expression profiles

Bgee: expression breadth ubiquitous, 138 present calls, max score 96.55.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0702 / max 68.5649, expressed in 5 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
36329	0.0230	3
36326	0.0202	3
36327	0.0113	4
36328	0.0092	4
36325	0.0065	3

Top tissues by expression

236 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.55	gold quality
left testis	UBERON:0004533	90.35	gold quality
right testis	UBERON:0004534	89.40	gold quality
testis	UBERON:0000473	86.64	gold quality
sperm	CL:0000019	77.50	silver quality
epithelial cell of pancreas	CL:0000083	76.48	gold quality
cardiac muscle of right atrium	UBERON:0003379	75.39	gold quality
left ventricle myocardium	UBERON:0006566	75.33	gold quality
vastus lateralis	UBERON:0001379	74.27	gold quality
quadriceps femoris	UBERON:0001377	73.11	gold quality
heart right ventricle	UBERON:0002080	71.43	gold quality
myocardium	UBERON:0002349	70.85	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	69.66	gold quality
Brodmann (1909) area 23	UBERON:0013554	68.08	gold quality
visceral pleura	UBERON:0002401	67.59	gold quality
parietal pleura	UBERON:0002400	67.58	gold quality
bone marrow cell	CL:0002092	67.33	silver quality
middle temporal gyrus	UBERON:0002771	67.30	gold quality
nasal cavity epithelium	UBERON:0005384	66.66	gold quality
ventricular zone	UBERON:0003053	64.23	gold quality
gingival epithelium	UBERON:0001949	64.18	gold quality
kidney epithelium	UBERON:0004819	63.96	gold quality
sural nerve	UBERON:0015488	63.74	silver quality
blood	UBERON:0000178	63.57	gold quality
adult organism	UBERON:0007023	62.73	gold quality
ganglionic eminence	UBERON:0004023	62.28	gold quality
secondary oocyte	CL:0000655	62.13	gold quality
primary visual cortex	UBERON:0002436	61.90	gold quality
cortical plate	UBERON:0005343	61.85	gold quality
parotid gland	UBERON:0001831	61.71	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.