LINC01990

Summary

LINC01990 (long intergenic non-protein coding RNA 1990, HGNC:52822) is a long non-coding RNA gene on chromosome 3q13.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52822
Approved symbol	LINC01990
Name	long intergenic non-protein coding RNA 1990
Location	3q13.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000273125
Ensembl biotype	lncRNA
Entrez	101929607
RNAcentral	URS000075BE8E — lncRNA, 1502 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000609293, ENST00000658914, ENST00000664038, ENST00000665848, ENST00000667329, ENST00000669596, ENST00000715949, ENST00000715950, ENST00000715951

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000609293 — 3 exons

Exon	Start	End
ENSE00003706003	107460673	107460790
ENSE00003853021	107430892	107430958
ENSE00004028431	107462573	107463912

Expression profiles

Bgee: expression breadth ubiquitous, 148 present calls, max score 81.87.

Top tissues by expression

233 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.87	gold quality
ventricular zone	UBERON:0003053	65.63	gold quality
ganglionic eminence	UBERON:0004023	64.65	gold quality
putamen	UBERON:0001874	63.41	gold quality
nucleus accumbens	UBERON:0001882	63.07	gold quality
cortical plate	UBERON:0005343	63.01	gold quality
caudate nucleus	UBERON:0001873	61.86	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.78	gold quality
right coronary artery	UBERON:0001625	61.49	gold quality
calcaneal tendon	UBERON:0003701	61.39	gold quality
prefrontal cortex	UBERON:0000451	61.18	gold quality
mucosa of stomach	UBERON:0001199	61.07	gold quality
stromal cell of endometrium	CL:0002255	61.03	gold quality
left ovary	UBERON:0002119	60.52	gold quality
tibial artery	UBERON:0007610	60.40	gold quality
popliteal artery	UBERON:0002250	60.39	gold quality
placenta	UBERON:0001987	59.90	gold quality
monocyte	CL:0000576	59.38	gold quality
amygdala	UBERON:0001876	59.30	gold quality
aorta	UBERON:0000947	58.89	gold quality
hypothalamus	UBERON:0001898	58.14	gold quality
descending thoracic aorta	UBERON:0002345	58.04	gold quality
anterior cingulate cortex	UBERON:0009835	57.42	gold quality
Brodmann (1909) area 9	UBERON:0013540	57.42	gold quality
ovary	UBERON:0000992	57.31	gold quality
ascending aorta	UBERON:0001496	57.22	gold quality
right ovary	UBERON:0002118	57.20	gold quality
thoracic aorta	UBERON:0001515	57.15	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	55.85	gold quality
lower lobe of lung	UBERON:0008949	55.40	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.