LINC01992

Summary

LINC01992 (long intergenic non-protein coding RNA 1992, HGNC:52824) is a long non-coding RNA gene on chromosome 17q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52824
Approved symbol	LINC01992
Name	long intergenic non-protein coding RNA 1992
Location	17q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260019
Ensembl biotype	lncRNA
Entrez	105371708
RNAcentral	URS0000BC44F4 — lncRNA, 2249 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000567574, ENST00000654644, ENST00000660253, ENST00000661257, ENST00000666961, ENST00000668365, ENST00000738648

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000567574 — 4 exons

Exon	Start	End
ENSE00002584057	27974088	27974223
ENSE00002599381	27931537	27931693
ENSE00002618720	27929548	27930475
ENSE00002624320	27930607	27930725

Expression profiles

Bgee: expression breadth broad, 81 present calls, max score 86.62.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0963 / max 17.4068, expressed in 51 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
164970	0.0854	49
164969	0.0109	2

Top tissues by expression

188 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.62	gold quality
endothelial cell	CL:0000115	62.30	gold quality
ventricular zone	UBERON:0003053	57.99	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	57.62	gold quality
monocyte	CL:0000576	56.23	gold quality
spinal cord	UBERON:0002240	56.18	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.36	silver quality
sperm	CL:0000019	54.79	gold quality
prefrontal cortex	UBERON:0000451	54.25	gold quality
corpus callosum	UBERON:0002336	52.22	gold quality
substantia nigra	UBERON:0002038	51.58	gold quality
midbrain	UBERON:0001891	50.28	gold quality
muscle of leg	UBERON:0001383	50.10	silver quality
minor salivary gland	UBERON:0001830	50.07	gold quality
upper lobe of lung	UBERON:0008948	48.58	silver quality
mouth mucosa	UBERON:0003729	48.27	gold quality
right lobe of liver	UBERON:0001114	48.17	silver quality
saliva-secreting gland	UBERON:0001044	48.15	gold quality
lower lobe of lung	UBERON:0008949	48.13	silver quality
islet of Langerhans	UBERON:0000006	48.11	silver quality
frontal cortex	UBERON:0001870	47.50	gold quality
hypothalamus	UBERON:0001898	46.95	gold quality
stomach	UBERON:0000945	46.85	gold quality
body of stomach	UBERON:0001161	46.82	gold quality
neocortex	UBERON:0001950	46.74	gold quality
left adrenal gland cortex	UBERON:0035825	46.60	gold quality
pylorus	UBERON:0001166	46.16	gold quality
gastrocnemius	UBERON:0001388	45.95	silver quality
left coronary artery	UBERON:0001626	45.93	silver quality
Ammon’s horn	UBERON:0001954	45.93	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.