LINC01993

Summary

LINC01993 (long intergenic non-protein coding RNA 1993, HGNC:52826) is a long non-coding RNA gene on chromosome 17q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52826
Approved symbol	LINC01993
Name	long intergenic non-protein coding RNA 1993
Location	17q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000204277
Ensembl biotype	lncRNA
Entrez	100996291
RNAcentral	URS0000294D70 — lncRNA, 2934 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000374945, ENST00000721625

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000374945 — 7 exons

Exon	Start	End
ENSE00001465208	78261349	78261913
ENSE00001465209	78263247	78264222
ENSE00001465210	78265977	78266233
ENSE00001465211	78269770	78269945
ENSE00001465213	78270652	78270846
ENSE00001465214	78271252	78271967
ENSE00001465215	78278444	78278492

Expression profiles

Bgee: expression breadth broad, 76 present calls, max score 68.44.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1300 / max 44.4711, expressed in 42 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
168356	0.0795	26
168355	0.0294	13
168354	0.0116	7
168353	0.0095	5

Top tissues by expression

76 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	68.44	silver quality
right atrium auricular region	UBERON:0006631	58.34	gold quality
blood	UBERON:0000178	57.13	gold quality
ganglionic eminence	UBERON:0004023	56.87	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.39	silver quality
liver	UBERON:0002107	50.11	gold quality
caudate nucleus	UBERON:0001873	49.69	gold quality
urinary bladder	UBERON:0001255	49.67	gold quality
gastrocnemius	UBERON:0001388	49.39	gold quality
lymph node	UBERON:0000029	49.38	silver quality
vermiform appendix	UBERON:0001154	49.25	gold quality
myometrium	UBERON:0001296	49.02	silver quality
subcutaneous adipose tissue	UBERON:0002190	47.84	gold quality
right lobe of liver	UBERON:0001114	47.74	silver quality
left uterine tube	UBERON:0001303	47.71	gold quality
multicellular organism	UBERON:0000468	47.18	gold quality
heart left ventricle	UBERON:0002084	46.99	silver quality
adult mammalian kidney	UBERON:0000082	46.74	gold quality
placenta	UBERON:0001987	45.72	silver quality
lung	UBERON:0002048	45.59	gold quality
kidney	UBERON:0002113	45.30	gold quality
prefrontal cortex	UBERON:0000451	45.29	silver quality
tonsil	UBERON:0002372	45.22	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	45.07	silver quality
prostate gland	UBERON:0002367	44.99	gold quality
upper lobe of left lung	UBERON:0008952	44.80	gold quality
adenohypophysis	UBERON:0002196	44.66	gold quality
adipose tissue	UBERON:0001013	44.65	gold quality
muscle layer of sigmoid colon	UBERON:0035805	44.45	silver quality
putamen	UBERON:0001874	44.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.38

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.