LINC01996

Summary

LINC01996 (long intergenic non-protein coding RNA 1996, HGNC:52830) is a long non-coding RNA gene on chromosome 17p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52830
Approved symbol	LINC01996
Name	long intergenic non-protein coding RNA 1996
Location	17p13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261863
Ensembl biotype	lncRNA
Entrez	400568
RNAcentral	URS0000ABD849 — lncRNA, 1270 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000573270, ENST00000820788

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000573270 — 2 exons

Exon	Start	End
ENSE00004227044	4610068	4610833
ENSE00004227046	4616763	4617704

Expression profiles

Bgee: expression breadth broad, 87 present calls, max score 79.44.

Top tissues by expression

188 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
gastrocnemius	UBERON:0001388	79.44	gold quality
muscle of leg	UBERON:0001383	78.59	gold quality
hindlimb stylopod muscle	UBERON:0004252	72.05	gold quality
heart right ventricle	UBERON:0002080	66.31	gold quality
nasal cavity epithelium	UBERON:0005384	64.92	gold quality
skeletal muscle tissue	UBERON:0001134	64.83	gold quality
myocardium	UBERON:0002349	62.76	gold quality
biceps brachii	UBERON:0001507	62.75	gold quality
lateral nuclear group of thalamus	UBERON:0002736	61.97	gold quality
vastus lateralis	UBERON:0001379	60.98	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	60.97	gold quality
quadriceps femoris	UBERON:0001377	60.76	gold quality
deltoid	UBERON:0001476	59.43	gold quality
amniotic fluid	UBERON:0000173	58.59	gold quality
upper lobe of left lung	UBERON:0008952	58.38	gold quality
sperm	CL:0000019	58.26	gold quality
mucosa of paranasal sinus	UBERON:0005030	57.99	gold quality
subthalamic nucleus	UBERON:0001906	57.73	gold quality
upper lobe of lung	UBERON:0008948	56.57	gold quality
dorsal plus ventral thalamus	UBERON:0001897	56.28	gold quality
ventral tegmental area	UBERON:0002691	56.00	gold quality
mucosa of sigmoid colon	UBERON:0004993	55.71	gold quality
colonic mucosa	UBERON:0000317	55.61	gold quality
lung	UBERON:0002048	53.84	gold quality
caecum	UBERON:0001153	53.83	gold quality
superior vestibular nucleus	UBERON:0007227	53.78	gold quality
decidua	UBERON:0002450	53.77	gold quality
endothelial cell	CL:0000115	53.59	gold quality
right lung	UBERON:0002167	53.05	gold quality
substantia nigra pars reticulata	UBERON:0001966	53.04	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.