LINC01997

Summary

LINC01997 (long intergenic non-protein coding RNA 1997, HGNC:52831) is a long non-coding RNA gene on chromosome 3q26.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52831
Approved symbol	LINC01997
Name	long intergenic non-protein coding RNA 1997
Location	3q26.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000241383
Ensembl biotype	lncRNA
Entrez	105374201
RNAcentral	URS0000E8CE9C — lncRNA, 871 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 2 lncRNA, 1 retained_intron

ENST00000494900, ENST00000650951, ENST00000792226

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000494900 — 2 exons

Exon	Start	End
ENSE00001821269	169005159	169005466
ENSE00004174044	169003013	169003194

Expression profiles

Bgee: expression breadth broad, 93 present calls, max score 76.76.

Top tissues by expression

93 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.76	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	64.52	silver quality
cortical plate	UBERON:0005343	60.63	gold quality
monocyte	CL:0000576	56.95	gold quality
skeletal muscle tissue	UBERON:0001134	56.12	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.85	silver quality
endometrium	UBERON:0001295	53.67	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.64	gold quality
liver	UBERON:0002107	53.59	gold quality
islet of Langerhans	UBERON:0000006	52.61	gold quality
blood	UBERON:0000178	51.55	gold quality
calcaneal tendon	UBERON:0003701	51.02	silver quality
mucosa of stomach	UBERON:0001199	50.98	gold quality
lymph node	UBERON:0000029	49.93	silver quality
prefrontal cortex	UBERON:0000451	49.85	gold quality
fallopian tube	UBERON:0003889	49.58	gold quality
right testis	UBERON:0004534	49.31	gold quality
kidney	UBERON:0002113	49.07	gold quality
adult mammalian kidney	UBERON:0000082	48.48	gold quality
small intestine Peyer’s patch	UBERON:0003454	47.77	gold quality
vermiform appendix	UBERON:0001154	47.76	gold quality
testis	UBERON:0000473	47.54	gold quality
muscle of leg	UBERON:0001383	47.02	gold quality
myometrium	UBERON:0001296	46.87	gold quality
right lobe of liver	UBERON:0001114	46.73	silver quality
ectocervix	UBERON:0012249	46.62	gold quality
fundus of stomach	UBERON:0001160	46.58	gold quality
hypothalamus	UBERON:0001898	46.58	gold quality
right ovary	UBERON:0002118	46.45	gold quality
left testis	UBERON:0004533	46.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.