LINC01998

Summary

LINC01998 (long intergenic non-protein coding RNA 1998, HGNC:52832) is a long non-coding RNA gene on chromosome 3q25.1.

Predicted to be involved in RNA processing. Predicted to be located in nucleolus.

Source: NCBI Gene 107986046 — RefSeq curated summary.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52832
Approved symbol	LINC01998
Name	long intergenic non-protein coding RNA 1998
Location	3q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243321
Ensembl biotype	lncRNA
Entrez	107986046
RNAcentral	URS000233F542 — lncRNA, 1969 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000464673, ENST00000726281

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000464673 — 2 exons

Exon	Start	End
ENSE00004050647	150080039	150080119
ENSE00004050648	150077494	150079381

Expression profiles

Bgee: expression breadth broad, 48 present calls, max score 58.50.

Top tissues by expression

178 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	58.50	gold quality
prefrontal cortex	UBERON:0000451	52.97	gold quality
amygdala	UBERON:0001876	50.72	gold quality
anterior cingulate cortex	UBERON:0009835	50.16	gold quality
nucleus accumbens	UBERON:0001882	50.13	gold quality
cardia of stomach	UBERON:0001162	49.58	gold quality
caudate nucleus	UBERON:0001873	49.40	gold quality
putamen	UBERON:0001874	48.78	gold quality
islet of Langerhans	UBERON:0000006	47.96	gold quality
neocortex	UBERON:0001950	47.91	gold quality
right hemisphere of cerebellum	UBERON:0014890	47.84	gold quality
frontal cortex	UBERON:0001870	47.55	gold quality
pancreas	UBERON:0001264	47.21	gold quality
forebrain	UBERON:0001890	46.82	gold quality
right frontal lobe	UBERON:0002810	46.65	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	46.55	gold quality
brain	UBERON:0000955	46.49	gold quality
muscle of leg	UBERON:0001383	46.45	gold quality
gall bladder	UBERON:0002110	46.40	silver quality
Brodmann (1909) area 9	UBERON:0013540	46.39	gold quality
cerebellar hemisphere	UBERON:0002245	46.33	gold quality
cerebral cortex	UBERON:0000956	46.23	gold quality
gastrocnemius	UBERON:0001388	46.23	gold quality
temporal lobe	UBERON:0001871	46.03	gold quality
substantia nigra	UBERON:0002038	45.91	gold quality
hypothalamus	UBERON:0001898	45.45	gold quality
midbrain	UBERON:0001891	45.17	gold quality
Ammon’s horn	UBERON:0001954	44.95	gold quality
oocyte	CL:0000023	44.92	gold quality
lower lobe of lung	UBERON:0008949	44.86	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.