LINC01999

Summary

LINC01999 (long intergenic non-protein coding RNA 1999, HGNC:52834) is a long non-coding RNA gene on chromosome 17q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52834
Approved symbol	LINC01999
Name	long intergenic non-protein coding RNA 1999
Location	17q23.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267772
Ensembl biotype	lncRNA
Entrez	388406
RNAcentral	URS00007E496C — lncRNA, 644 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000592917, ENST00000844191, ENST00000844192, ENST00000844361, ENST00000844362, ENST00000844363, ENST00000844364

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000592917 — 4 exons

Exon	Start	End
ENSE00002738289	60577197	60577338
ENSE00002952980	60565333	60565439
ENSE00004271048	60564547	60564627
ENSE00004271050	60586308	60586625

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 90.33.

Top tissues by expression

82 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	90.33	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.96	silver quality
ventricular zone	UBERON:0003053	65.29	gold quality
liver	UBERON:0002107	58.00	gold quality
right lobe of liver	UBERON:0001114	57.09	gold quality
placenta	UBERON:0001987	56.00	gold quality
monocyte	CL:0000576	52.26	silver quality
cortex of kidney	UBERON:0001225	51.68	gold quality
vermiform appendix	UBERON:0001154	51.56	gold quality
right testis	UBERON:0004534	51.01	gold quality
left testis	UBERON:0004533	50.67	gold quality
testis	UBERON:0000473	50.46	gold quality
islet of Langerhans	UBERON:0000006	49.66	gold quality
hindlimb stylopod muscle	UBERON:0004252	49.59	gold quality
prefrontal cortex	UBERON:0000451	48.79	gold quality
lymph node	UBERON:0000029	48.40	gold quality
blood	UBERON:0000178	47.08	silver quality
endometrium	UBERON:0001295	46.84	gold quality
adult mammalian kidney	UBERON:0000082	46.69	gold quality
left ovary	UBERON:0002119	46.60	gold quality
ovary	UBERON:0000992	46.48	gold quality
gastrocnemius	UBERON:0001388	45.85	silver quality
tonsil	UBERON:0002372	45.74	gold quality
multicellular organism	UBERON:0000468	45.11	gold quality
amygdala	UBERON:0001876	44.51	gold quality
right coronary artery	UBERON:0001625	44.03	gold quality
heart left ventricle	UBERON:0002084	43.74	gold quality
hypothalamus	UBERON:0001898	43.54	silver quality
saliva-secreting gland	UBERON:0001044	43.53	gold quality
right ovary	UBERON:0002118	43.53	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.