LINC02000

Summary

LINC02000 (long intergenic non-protein coding RNA 2000, HGNC:52835) is a long non-coding RNA gene on chromosome 3q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52835
Approved symbol	LINC02000
Name	long intergenic non-protein coding RNA 2000
Location	3q22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243832
Ensembl biotype	lncRNA
Entrez	100507210
RNAcentral	URS0000A771D6 — lncRNA, 650 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000483245, ENST00000720276, ENST00000720277, ENST00000720278

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000483245 — 2 exons

Exon	Start	End
ENSE00004038785	134057410	134057957
ENSE00004038787	134055248	134055656

Expression profiles

Bgee: expression breadth broad, 42 present calls, max score 92.03.

Top tissues by expression

42 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.03	gold quality
mucosa of transverse colon	UBERON:0004991	66.69	gold quality
duodenum	UBERON:0002114	60.75	gold quality
rectum	UBERON:0001052	58.30	gold quality
small intestine	UBERON:0002108	57.59	gold quality
small intestine Peyer’s patch	UBERON:0003454	56.80	gold quality
vermiform appendix	UBERON:0001154	56.10	gold quality
intestine	UBERON:0000160	55.98	gold quality
transverse colon	UBERON:0001157	55.19	gold quality
colon	UBERON:0001155	54.80	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.46	gold quality
muscle tissue	UBERON:0002385	53.50	gold quality
multicellular organism	UBERON:0000468	52.55	gold quality
islet of Langerhans	UBERON:0000006	52.07	gold quality
monocyte	CL:0000576	51.77	gold quality
cortex of kidney	UBERON:0001225	50.11	silver quality
kidney	UBERON:0002113	49.32	gold quality
adult mammalian kidney	UBERON:0000082	49.28	gold quality
muscle layer of sigmoid colon	UBERON:0035805	47.77	gold quality
smooth muscle tissue	UBERON:0001135	47.13	gold quality
stomach	UBERON:0000945	45.52	gold quality
gastrocnemius	UBERON:0001388	44.19	silver quality
body of stomach	UBERON:0001161	43.91	gold quality
spleen	UBERON:0002106	43.15	gold quality
esophagus mucosa	UBERON:0002469	43.14	silver quality
subcutaneous adipose tissue	UBERON:0002190	42.30	gold quality
skin of leg	UBERON:0001511	42.22	silver quality
ascending aorta	UBERON:0001496	41.68	silver quality
cerebral cortex	UBERON:0000956	40.48	silver quality
right coronary artery	UBERON:0001625	40.34	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.