LINC02002

Summary

LINC02002 (long intergenic non-protein coding RNA 2002, HGNC:52837) is a long non-coding RNA gene on chromosome 17p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52837
Approved symbol	LINC02002
Name	long intergenic non-protein coding RNA 2002
Location	17p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000263609
Ensembl biotype	lncRNA
Entrez	105371595
RNAcentral	URS00026A21A4 — lncRNA, 1376 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000578977, ENST00000579836, ENST00000580507, ENST00000653536, ENST00000656051, ENST00000656149, ENST00000659671, ENST00000659967, ENST00000660505, ENST00000780000, ENST00000780001, ENST00000780002, ENST00000780003, ENST00000780004

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000578977 — 8 exons

Exon	Start	End
ENSE00002685457	22241266	22241505
ENSE00002692652	22234330	22234613
ENSE00002705959	22245249	22245399
ENSE00002717671	22244559	22244733
ENSE00002718515	22266152	22266362
ENSE00002725312	22245826	22245930
ENSE00002727995	22240992	22241162
ENSE00002731013	22254346	22254489

Expression profiles

Bgee: expression breadth broad, 54 present calls, max score 88.16.

Top tissues by expression

172 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.16	gold quality
buccal mucosa cell	CL:0002336	76.52	silver quality
ganglionic eminence	UBERON:0004023	62.37	gold quality
islet of Langerhans	UBERON:0000006	60.76	gold quality
sperm	CL:0000019	59.24	gold quality
left testis	UBERON:0004533	55.53	gold quality
right testis	UBERON:0004534	55.08	gold quality
testis	UBERON:0000473	54.86	gold quality
prefrontal cortex	UBERON:0000451	53.63	gold quality
monocyte	CL:0000576	53.31	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	50.10	silver quality
gastrocnemius	UBERON:0001388	50.10	gold quality
right lobe of liver	UBERON:0001114	48.67	silver quality
lower lobe of lung	UBERON:0008949	48.67	silver quality
right atrium auricular region	UBERON:0006631	47.72	gold quality
muscle layer of sigmoid colon	UBERON:0035805	45.89	gold quality
cardiac atrium	UBERON:0002081	45.63	gold quality
heart left ventricle	UBERON:0002084	45.54	gold quality
pancreas	UBERON:0001264	44.88	gold quality
cardiac ventricle	UBERON:0002082	44.28	gold quality
adenohypophysis	UBERON:0002196	44.12	gold quality
heart	UBERON:0000948	44.05	gold quality
left adrenal gland	UBERON:0001234	43.99	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
skin of hip	UBERON:0001554	43.20	silver quality
Brodmann (1909) area 9	UBERON:0013540	43.19	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
anatomical system	UBERON:0000467	42.56	gold quality
material anatomical entity	UBERON:0000465	42.45	gold quality
multicellular organism	UBERON:0000468	42.41	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.