LINC02004

Summary

LINC02004 (long intergenic non-protein coding RNA 2004, HGNC:52838) is a long non-coding RNA gene on chromosome 3q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52838
Approved symbol	LINC02004
Name	long intergenic non-protein coding RNA 2004
Location	3q22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000240006
Ensembl biotype	lncRNA
Entrez	105374119
RNAcentral	URS0002A6B127 — lncRNA, 1976 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 22 — 22 lncRNA

ENST00000482019, ENST00000702198, ENST00000765907, ENST00000765908, ENST00000765909, ENST00000765910, ENST00000765911, ENST00000765912, ENST00000765913, ENST00000765914, ENST00000765915, ENST00000765916, ENST00000765917, ENST00000765918, ENST00000765919, ENST00000765920, ENST00000765921, ENST00000765922, ENST00000765923, ENST00000765924, ENST00000765925, ENST00000765926

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000482019 — 2 exons

Exon	Start	End
ENSE00004124242	134313440	134313617
ENSE00004124250	134320920	134321288

Expression profiles

Bgee: expression breadth ubiquitous, 113 present calls, max score 76.03.

FANTOM5 (CAGE): breadth broad, TPM avg 0.6061 / max 28.5508, expressed in 316 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
38703	0.6061	316

Top tissues by expression

113 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	76.03	gold quality
liver	UBERON:0002107	69.98	gold quality
right lobe of liver	UBERON:0001114	68.99	gold quality
lower esophagus mucosa	UBERON:0035834	66.03	gold quality
lymph node	UBERON:0000029	65.36	gold quality
subcutaneous adipose tissue	UBERON:0002190	65.31	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	64.56	gold quality
gastrocnemius	UBERON:0001388	64.21	gold quality
muscle of leg	UBERON:0001383	64.18	gold quality
right uterine tube	UBERON:0001302	63.96	gold quality
adipose tissue	UBERON:0001013	63.95	gold quality
monocyte	CL:0000576	63.87	gold quality
popliteal artery	UBERON:0002250	63.62	gold quality
tibial artery	UBERON:0007610	63.61	gold quality
tonsil	UBERON:0002372	63.24	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.13	gold quality
placenta	UBERON:0001987	63.01	gold quality
right coronary artery	UBERON:0001625	62.78	gold quality
omental fat pad	UBERON:0010414	62.12	gold quality
urinary bladder	UBERON:0001255	62.08	gold quality
blood	UBERON:0000178	61.45	gold quality
sural nerve	UBERON:0015488	61.17	silver quality
prefrontal cortex	UBERON:0000451	60.74	gold quality
apex of heart	UBERON:0002098	60.52	gold quality
islet of Langerhans	UBERON:0000006	60.22	gold quality
fundus of stomach	UBERON:0001160	59.95	gold quality
superior frontal gyrus	UBERON:0002661	59.85	gold quality
left coronary artery	UBERON:0001626	59.73	gold quality
corpus callosum	UBERON:0002336	59.49	gold quality
tibial nerve	UBERON:0001323	59.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.