LINC02005

Summary

LINC02005 (long intergenic non-protein coding RNA 2005, HGNC:52839) is a long non-coding RNA gene on chromosome 3p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52839
Approved symbol	LINC02005
Name	long intergenic non-protein coding RNA 2005
Location	3p13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000242741
Ensembl biotype	lncRNA
Entrez	105377165
RNAcentral	URS0000BC463A — lncRNA, 1164 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000498832, ENST00000659853, ENST00000664767, ENST00000670514, ENST00000756909

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000498832 — 4 exons

Exon	Start	End
ENSE00001816260	73869776	73869961
ENSE00001891978	73808601	73808668
ENSE00001895345	73902531	73902866
ENSE00001948858	73878806	73878997

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 87.00.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0239 / max 6.2458, expressed in 9 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
202814	0.0239	9

Top tissues by expression

103 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	87.00	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.18	gold quality
skeletal muscle tissue	UBERON:0001134	67.16	silver quality
muscle tissue	UBERON:0002385	64.37	silver quality
sural nerve	UBERON:0015488	62.82	silver quality
prostate gland	UBERON:0002367	61.46	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.95	gold quality
urinary bladder	UBERON:0001255	58.56	gold quality
esophagus mucosa	UBERON:0002469	58.16	gold quality
lower esophagus mucosa	UBERON:0035834	56.50	gold quality
thoracic mammary gland	UBERON:0005200	55.53	gold quality
esophagus	UBERON:0001043	55.15	gold quality
vermiform appendix	UBERON:0001154	54.88	gold quality
duodenum	UBERON:0002114	53.74	gold quality
liver	UBERON:0002107	53.48	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.49	gold quality
tonsil	UBERON:0002372	52.05	gold quality
right lobe of liver	UBERON:0001114	52.00	gold quality
lymph node	UBERON:0000029	51.73	gold quality
omental fat pad	UBERON:0010414	51.49	gold quality
calcaneal tendon	UBERON:0003701	51.17	gold quality
adipose tissue	UBERON:0001013	51.04	gold quality
muscle of leg	UBERON:0001383	51.02	gold quality
gastrocnemius	UBERON:0001388	50.77	gold quality
skin of abdomen	UBERON:0001416	50.50	gold quality
subcutaneous adipose tissue	UBERON:0002190	50.31	gold quality
heart left ventricle	UBERON:0002084	49.58	gold quality
left uterine tube	UBERON:0001303	49.54	gold quality
kidney	UBERON:0002113	49.52	silver quality
heart	UBERON:0000948	49.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.