LINC02006

Summary

LINC02006 (long intergenic non-protein coding RNA 2006, HGNC:52842) is a long non-coding RNA gene on chromosome 3q25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52842
Approved symbol	LINC02006
Name	long intergenic non-protein coding RNA 2006
Location	3q25.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000238755
Ensembl biotype	lncRNA
Entrez	105374165
RNAcentral	URS0000BC4657 — lncRNA, 2371 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000488210, ENST00000492569, ENST00000493214

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000488210 — 4 exons

Exon	Start	End
ENSE00001837806	153730761	153730807
ENSE00001857015	153927261	153927317
ENSE00001859180	153937508	153937670
ENSE00001870212	153979930	153980186

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 81.32.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0192 / max 12.6286, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
45200	0.0192	4

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.32	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.69	gold quality
lower esophagus mucosa	UBERON:0035834	71.81	gold quality
esophagus mucosa	UBERON:0002469	71.42	gold quality
right lung	UBERON:0002167	68.09	gold quality
placenta	UBERON:0001987	66.50	gold quality
omental fat pad	UBERON:0010414	64.69	gold quality
esophagus	UBERON:0001043	62.95	gold quality
adipose tissue	UBERON:0001013	62.24	gold quality
tonsil	UBERON:0002372	60.55	gold quality
metanephros cortex	UBERON:0010533	60.23	gold quality
subcutaneous adipose tissue	UBERON:0002190	59.93	gold quality
ganglionic eminence	UBERON:0004023	59.48	gold quality
sural nerve	UBERON:0015488	58.38	silver quality
cortex of kidney	UBERON:0001225	56.66	gold quality
primary visual cortex	UBERON:0002436	56.17	gold quality
kidney	UBERON:0002113	55.91	gold quality
calcaneal tendon	UBERON:0003701	55.53	gold quality
skeletal muscle tissue	UBERON:0001134	55.32	gold quality
adult mammalian kidney	UBERON:0000082	55.19	gold quality
lung	UBERON:0002048	55.00	gold quality
lymph node	UBERON:0000029	54.78	gold quality
liver	UBERON:0002107	54.61	silver quality
thoracic mammary gland	UBERON:0005200	54.51	gold quality
upper lobe of left lung	UBERON:0008952	54.43	gold quality
prefrontal cortex	UBERON:0000451	54.01	gold quality
endometrium	UBERON:0001295	53.81	gold quality
bone marrow	UBERON:0002371	53.66	gold quality
left uterine tube	UBERON:0001303	53.65	gold quality
muscle of leg	UBERON:0001383	53.58	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.52

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.