LINC02008

Summary

LINC02008 (long intergenic non-protein coding RNA 2008, HGNC:52844) is a long non-coding RNA gene on chromosome 3p12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52844
Approved symbol	LINC02008
Name	long intergenic non-protein coding RNA 2008
Location	3p12.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000239440
Ensembl biotype	lncRNA
Entrez	105377180
RNAcentral	URS0000BC454C — lncRNA, 1947 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000470263, ENST00000494340, ENST00000653255, ENST00000654980, ENST00000666096, ENST00000666519, ENST00000668833, ENST00000725961, ENST00000725962, ENST00000725963, ENST00000725964, ENST00000725965, ENST00000725966, ENST00000725967, ENST00000725968, ENST00000725969, ENST00000725970, ENST00000725971

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000470263 — 9 exons

Exon	Start	End
ENSE00001826950	82455672	82455815
ENSE00001831806	82453482	82453552
ENSE00001844731	82457951	82458147
ENSE00001865933	81986138	81986381
ENSE00001880774	82202329	82202454
ENSE00001931201	82416120	82416301
ENSE00001940976	82454386	82454510
ENSE00001947157	82462916	82463675
ENSE00001958840	82185352	82185453

Expression profiles

Bgee: expression breadth broad, 73 present calls, max score 80.98.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0993 / max 19.2868, expressed in 20 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
37405	0.0872	19
37404	0.0120	9

Top tissues by expression

178 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.98	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.81	gold quality
cortical plate	UBERON:0005343	66.38	gold quality
stromal cell of endometrium	CL:0002255	64.49	gold quality
buccal mucosa cell	CL:0002336	58.73	gold quality
adrenal tissue	UBERON:0018303	56.72	gold quality
upper leg skin	UBERON:0004262	53.69	silver quality
calcaneal tendon	UBERON:0003701	52.90	gold quality
monocyte	CL:0000576	52.82	gold quality
prefrontal cortex	UBERON:0000451	52.64	gold quality
right adrenal gland cortex	UBERON:0035827	51.79	gold quality
muscle of leg	UBERON:0001383	50.32	gold quality
lower esophagus mucosa	UBERON:0035834	48.66	gold quality
gastrocnemius	UBERON:0001388	48.50	gold quality
islet of Langerhans	UBERON:0000006	48.17	gold quality
left adrenal gland cortex	UBERON:0035825	47.86	gold quality
adrenal gland	UBERON:0002369	47.61	gold quality
adrenal cortex	UBERON:0001235	47.29	gold quality
right adrenal gland	UBERON:0001233	47.27	gold quality
left adrenal gland	UBERON:0001234	46.74	gold quality
tendon	UBERON:0000043	46.21	silver quality
frontal cortex	UBERON:0001870	46.06	gold quality
corpus callosum	UBERON:0002336	45.80	silver quality
heart	UBERON:0000948	45.37	gold quality
neocortex	UBERON:0001950	45.18	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	44.67	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	44.34	gold quality
Brodmann (1909) area 9	UBERON:0013540	44.24	silver quality
right atrium auricular region	UBERON:0006631	44.05	silver quality
adult mammalian kidney	UBERON:0000082	43.77	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.92

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.