LINC02009

Summary

LINC02009 (long intergenic non-protein coding RNA 2009, HGNC:52845) is a long non-coding RNA gene on chromosome 3p21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52845
Approved symbol	LINC02009
Name	long intergenic non-protein coding RNA 2009
Location	3p21.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000283646
Ensembl biotype	lncRNA
Entrez	105377068
RNAcentral	URS0000CCE052 — lncRNA, 3035 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000635852, ENST00000661642

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000635852 — 5 exons

Exon	Start	End
ENSE00003791952	46419517	46419663
ENSE00003793439	46416524	46419046
ENSE00003796245	46421373	46421492
ENSE00003800213	46422685	46422798
ENSE00003800875	46423545	46423591

Expression profiles

Bgee: expression breadth ubiquitous, 115 present calls, max score 82.00.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0683 / max 18.9122, expressed in 25 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
41976	0.0344	15
41977	0.0187	11
202743	0.0152	4

Top tissues by expression

115 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow	UBERON:0002371	82.00	gold quality
bone marrow cell	CL:0002092	81.25	gold quality
spleen	UBERON:0002106	74.42	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	71.60	gold quality
saliva-secreting gland	UBERON:0001044	70.30	gold quality
minor salivary gland	UBERON:0001830	70.29	gold quality
body of pancreas	UBERON:0001150	70.04	gold quality
apex of heart	UBERON:0002098	68.68	gold quality
pancreas	UBERON:0001264	64.93	gold quality
blood	UBERON:0000178	63.54	gold quality
thoracic mammary gland	UBERON:0005200	62.38	gold quality
tonsil	UBERON:0002372	61.98	gold quality
body of stomach	UBERON:0001161	61.95	gold quality
right frontal lobe	UBERON:0002810	61.84	gold quality
frontal cortex	UBERON:0001870	61.64	gold quality
prefrontal cortex	UBERON:0000451	61.57	gold quality
superior frontal gyrus	UBERON:0002661	61.19	gold quality
stomach	UBERON:0000945	61.03	gold quality
right lobe of thyroid gland	UBERON:0001119	61.00	gold quality
cortex of kidney	UBERON:0001225	60.74	gold quality
metanephros cortex	UBERON:0010533	59.95	gold quality
heart left ventricle	UBERON:0002084	59.66	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	59.31	gold quality
Brodmann (1909) area 9	UBERON:0013540	59.25	gold quality
left lobe of thyroid gland	UBERON:0001120	58.92	gold quality
thyroid gland	UBERON:0002046	58.74	gold quality
endocervix	UBERON:0000458	58.60	gold quality
cerebral cortex	UBERON:0000956	57.94	gold quality
kidney	UBERON:0002113	57.52	gold quality
skeletal muscle tissue	UBERON:0001134	57.44	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.08

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.