LINC02015

Summary

LINC02015 (long intergenic non-protein coding RNA 2015, HGNC:52850) is a long non-coding RNA gene on chromosome 3q26.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52850
Approved symbol	LINC02015
Name	long intergenic non-protein coding RNA 2015
Location	3q26.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231574
Ensembl biotype	lncRNA
Entrez	102724550
RNAcentral	URS000046678A — lncRNA, 2957 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000434309, ENST00000436078, ENST00000450500, ENST00000654164, ENST00000660040, ENST00000668196, ENST00000686116, ENST00000702312, ENST00000716292, ENST00000719092, ENST00000719093, ENST00000719094, ENST00000719095, ENST00000719096, ENST00000812470, ENST00000812471

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434309 — 4 exons

Exon	Start	End
ENSE00001753247	177895613	177895776
ENSE00001753942	177827783	177827830
ENSE00001804002	177896564	177896895
ENSE00004036470	177899011	177899227

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 75.06.

FANTOM5 (CAGE): breadth broad, TPM avg 1.0624 / max 125.4279, expressed in 355 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
39898	0.8725	302
39899	0.1510	55
39897	0.0388	15

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	75.06	silver quality
liver	UBERON:0002107	70.88	gold quality
colonic epithelium	UBERON:0000397	67.89	silver quality
skeletal muscle tissue	UBERON:0001134	67.80	gold quality
right lobe of liver	UBERON:0001114	64.55	gold quality
stromal cell of endometrium	CL:0002255	62.96	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.38	gold quality
islet of Langerhans	UBERON:0000006	61.28	gold quality
ganglionic eminence	UBERON:0004023	59.82	gold quality
muscle tissue	UBERON:0002385	58.73	gold quality
ventricular zone	UBERON:0003053	57.93	silver quality
pancreas	UBERON:0001264	55.77	gold quality
cortex of kidney	UBERON:0001225	55.63	gold quality
monocyte	CL:0000576	54.81	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.80	silver quality
gall bladder	UBERON:0002110	54.66	gold quality
smooth muscle tissue	UBERON:0001135	53.13	gold quality
left adrenal gland cortex	UBERON:0035825	52.90	gold quality
kidney	UBERON:0002113	52.33	gold quality
left adrenal gland	UBERON:0001234	51.94	gold quality
adrenal gland	UBERON:0002369	51.65	gold quality
body of pancreas	UBERON:0001150	51.48	gold quality
adult mammalian kidney	UBERON:0000082	51.34	gold quality
heart left ventricle	UBERON:0002084	51.33	gold quality
blood	UBERON:0000178	50.83	gold quality
vermiform appendix	UBERON:0001154	50.29	gold quality
prefrontal cortex	UBERON:0000451	50.27	gold quality
primary visual cortex	UBERON:0002436	49.70	gold quality
bone marrow	UBERON:0002371	49.11	silver quality
heart	UBERON:0000948	48.88	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.