LINC02020

Summary

LINC02020 (long intergenic non-protein coding RNA 2020, HGNC:52855) is a long non-coding RNA gene on chromosome 3q27.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52855
Approved symbol	LINC02020
Name	long intergenic non-protein coding RNA 2020
Location	3q27.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234548
Ensembl biotype	lncRNA
Entrez	107986164
RNAcentral	URS0000CCE07E — lncRNA, 600 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 29 — 29 lncRNA

ENST00000414102, ENST00000421006, ENST00000434896, ENST00000435548, ENST00000651581, ENST00000653290, ENST00000653327, ENST00000655604, ENST00000657246, ENST00000657428, ENST00000658003, ENST00000658309, ENST00000659303, ENST00000659833, ENST00000660881, ENST00000661596, ENST00000662106, ENST00000662985, ENST00000663132, ENST00000663703, ENST00000664789, ENST00000665288, ENST00000665684, ENST00000667882, ENST00000670005, ENST00000670102, ENST00000671153, ENST00000799267, ENST00000799268

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414102 — 4 exons

Exon	Start	End
ENSE00001621054	186440345	186440409
ENSE00001710381	186450408	186450696
ENSE00001788589	186440982	186441179
ENSE00003847073	186444906	186445249

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 82.53.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0153 / max 12.1793, expressed in 3 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
40262	0.0108	3
40261	0.0045	3

Top tissues by expression

103 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.53	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.42	gold quality
right testis	UBERON:0004534	70.63	gold quality
left testis	UBERON:0004533	70.51	gold quality
testis	UBERON:0000473	70.47	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.66	gold quality
ganglionic eminence	UBERON:0004023	59.24	gold quality
ventricular zone	UBERON:0003053	57.23	silver quality
myometrium	UBERON:0001296	54.72	gold quality
liver	UBERON:0002107	53.47	gold quality
corpus callosum	UBERON:0002336	52.48	gold quality
blood	UBERON:0000178	52.21	gold quality
monocyte	CL:0000576	52.20	gold quality
right lobe of liver	UBERON:0001114	51.77	gold quality
bone marrow	UBERON:0002371	51.72	silver quality
cortex of kidney	UBERON:0001225	51.61	gold quality
lymph node	UBERON:0000029	51.22	gold quality
muscle of leg	UBERON:0001383	50.23	gold quality
islet of Langerhans	UBERON:0000006	49.99	gold quality
urinary bladder	UBERON:0001255	49.82	gold quality
metanephros cortex	UBERON:0010533	49.80	gold quality
gastrocnemius	UBERON:0001388	49.58	gold quality
lower esophagus mucosa	UBERON:0035834	49.55	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.94	gold quality
gall bladder	UBERON:0002110	48.81	gold quality
kidney	UBERON:0002113	48.74	gold quality
multicellular organism	UBERON:0000468	48.05	gold quality
adrenal tissue	UBERON:0018303	46.84	silver quality
adult mammalian kidney	UBERON:0000082	46.80	gold quality
endometrium	UBERON:0001295	46.56	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.