LINC02021

Summary

LINC02021 (long intergenic non-protein coding RNA 2021, HGNC:52856) is a long non-coding RNA gene on chromosome 3q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52856
Approved symbol	LINC02021
Name	long intergenic non-protein coding RNA 2021
Location	3q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249846
Ensembl biotype	lncRNA
Entrez	105374104
RNAcentral	URS0002A39364 — lncRNA, 2592 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 61 — 61 lncRNA

ENST00000504808, ENST00000507856, ENST00000514145, ENST00000658712, ENST00000659120, ENST00000665912, ENST00000668664, ENST00000670900, ENST00000671047, ENST00000702493, ENST00000716157, ENST00000787193, ENST00000787194, ENST00000787195, ENST00000787196, ENST00000787197, ENST00000787198, ENST00000787199, ENST00000787200, ENST00000787201, ENST00000787202, ENST00000787203, ENST00000787204, ENST00000787205, ENST00000787206, ENST00000787207, ENST00000787208, ENST00000787209, ENST00000787210, ENST00000787211, ENST00000787212, ENST00000787213, ENST00000787214, ENST00000787215, ENST00000787216, ENST00000787217, ENST00000787218, ENST00000787219, ENST00000787220, ENST00000787221, ENST00000787222, ENST00000787223, ENST00000787224, ENST00000787225, ENST00000787226, ENST00000787227, ENST00000787228, ENST00000787229, ENST00000787230, ENST00000787231, ENST00000787232, ENST00000787233, ENST00000787234, ENST00000787235, ENST00000787236, ENST00000787237, ENST00000787238, ENST00000787239, ENST00000787240, ENST00000787241, ENST00000787242

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504808 — 3 exons

Exon	Start	End
ENSE00001610233	130116837	130117092
ENSE00004164509	130112425	130112744
ENSE00004164540	130119321	130120579

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 83.82.

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.82	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.83	gold quality
sural nerve	UBERON:0015488	82.80	gold quality
adenohypophysis	UBERON:0002196	78.24	gold quality
pituitary gland	UBERON:0000007	78.01	gold quality
right uterine tube	UBERON:0001302	75.37	gold quality
left ovary	UBERON:0002119	75.08	gold quality
ovary	UBERON:0000992	75.07	gold quality
adrenal tissue	UBERON:0018303	75.02	gold quality
colonic epithelium	UBERON:0000397	74.89	gold quality
calcaneal tendon	UBERON:0003701	74.89	gold quality
right lobe of thyroid gland	UBERON:0001119	74.78	gold quality
corpus callosum	UBERON:0002336	74.59	gold quality
right ovary	UBERON:0002118	74.48	gold quality
thyroid gland	UBERON:0002046	74.29	gold quality
left lobe of thyroid gland	UBERON:0001120	74.07	gold quality
kidney	UBERON:0002113	72.21	gold quality
adult mammalian kidney	UBERON:0000082	71.77	gold quality
superior frontal gyrus	UBERON:0002661	71.56	gold quality
cortex of kidney	UBERON:0001225	71.53	gold quality
duodenum	UBERON:0002114	71.07	gold quality
body of uterus	UBERON:0009853	70.78	gold quality
nucleus accumbens	UBERON:0001882	70.45	gold quality
transverse colon	UBERON:0001157	69.78	gold quality
myometrium	UBERON:0001296	69.75	gold quality
primary visual cortex	UBERON:0002436	69.58	gold quality
apex of heart	UBERON:0002098	69.19	gold quality
mucosa of transverse colon	UBERON:0004991	68.97	gold quality
bone marrow cell	CL:0002092	68.87	silver quality
uterine cervix	UBERON:0000002	68.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.20

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.